| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_028655m |
| Family | PL4 |
| Protein Properties | Length: 519 Molecular Weight: 59990.4 Isoelectric Point: 9.5987 |
| Chromosome | Chromosome/Scaffold: 01828 Start: 83075 End: 87493 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 1 | 497 | 0 |
| VVIDNGIVEVTLSKPKGFVTGVKYKGINNVLDIQDSEDNRGYWDVVWYKPGRVDIFDRMEGTNYTVIMADENQVEVSFTRRWDVSIDSNIVPLNIDKRFI MRRGSSGFYAYAILERLEGWPDVNMDQIRIVFKLQTNKFNYMAISDKKQRIMPTLEDRARGQPLAYPEAVLLTHPSNPQLTGEVDDKYEYSMEHKESKLY GWISDDKSVGFWMIRPSDEFCNGGPIKQDLTSHAGPIVLSMFTSTHYGGKDINTQYRKEEQWKKVFGPVFIYLNSNRANGAYKTLWKDAKRQMSIEVESW PYDFPQSKDFPHSNNRATVEGQLIIHDEGVSKLASSAHVGLAAPGDAGSWQFESKGYQFWTRANKKGFFSIKNVRAGIYNLYAWVPGFIGNYMYKWRISI KQGSKIILGVLKYIPPRNGPTLWEIGIPNRSATEFFIPDPKPTLENKLFINKPHDKFRQYGLWDRYSNLFPSNDLIYHVGKGNYTQDWFFAHVPRVY | |||
| Full Sequence |
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| Protein Sequence Length: 519 Download |
| VVIDNGIVEV TLSKPKGFVT GVKYKGINNV LDIQDSEDNR GYWDVVWYKP GRVDIFDRME 60 GTNYTVIMAD ENQVEVSFTR RWDVSIDSNI VPLNIDKRFI MRRGSSGFYA YAILERLEGW 120 PDVNMDQIRI VFKLQTNKFN YMAISDKKQR IMPTLEDRAR GQPLAYPEAV LLTHPSNPQL 180 TGEVDDKYEY SMEHKESKLY GWISDDKSVG FWMIRPSDEF CNGGPIKQDL TSHAGPIVLS 240 MFTSTHYGGK DINTQYRKEE QWKKVFGPVF IYLNSNRANG AYKTLWKDAK RQMSIEVESW 300 PYDFPQSKDF PHSNNRATVE GQLIIHDEGV SKLASSAHVG LAAPGDAGSW QFESKGYQFW 360 TRANKKGFFS IKNVRAGIYN LYAWVPGFIG NYMYKWRISI KQGSKIILGV LKYIPPRNGP 420 TLWEIGIPNR SATEFFIPDP KPTLENKLFI NKPHDKFRQY GLWDRYSNLF PSNDLIYHVG 480 KGNYTQDWFF AHVPRVYIVR INNKKIIKKY FVLQINDL* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10317 | RGL4_C | 6.0e-9 | 423 | 493 | 71 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10316 | RGL4_M | 6.0e-27 | 316 | 411 | 96 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 1.0e-74 | 1 | 276 | 282 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 2.0e-91 | 1 | 184 | 186 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_179847.1 | 0 | 1 | 495 | 62 | 557 | lyase [Arabidopsis thaliana] |
| RefSeq | XP_002308510.1 | 0 | 1 | 495 | 57 | 553 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002319997.1 | 0 | 1 | 495 | 1 | 498 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527229.1 | 0 | 1 | 495 | 54 | 550 | lyase, putative [Ricinus communis] |
| RefSeq | XP_002527245.1 | 0 | 1 | 495 | 2 | 500 | lyase, putative [Ricinus communis] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EL398250 | 268 | 118 | 385 | 0 |
| DY969340 | 284 | 212 | 495 | 0 |
| GW864372 | 311 | 130 | 435 | 0 |
| EL450442 | 277 | 97 | 373 | 0 |
| JG640880 | 272 | 138 | 404 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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