Basic Information | |
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Species | Manihot esculenta |
Cazyme ID | cassava4.1_028711m |
Family | PL1 |
Protein Properties | Length: 393 Molecular Weight: 42696 Isoelectric Point: 5.1663 |
Chromosome | Chromosome/Scaffold: 06598 Start: 295071 End: 296622 |
Description | root hair specific 14 |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 114 | 312 | 0 |
IIFDEDMVIALENELIMNSFKTIDGRGAKVEIANGPCLTIEGVSHVIIHGISIHDCKPGKQGLVRSTPMHVGERQGSDGDAIAVFASSNIWIDHCFLASC TDGLIDVIHASTSVTISNNYFSQHDKVMLLGHNDEYTADKVMKVTVVFNHFGTGLVQRLPRVRFGYAHVANNRYDQWEMYAIGGSADPTIFSEANYFIA |
Full Sequence |
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Protein Sequence Length: 393 Download |
MASLRHSVFL ASLVSIFVFT SQANADDYEA QPLSSYLPSN TQSVLNTIDS CWRTDSNWAS 60 NRQALADCAV GFGQAALGGK YGDIYVVTTP DDDPINPKPG TLRYGAIQTE PLWIIFDEDM 120 VIALENELIM NSFKTIDGRG AKVEIANGPC LTIEGVSHVI IHGISIHDCK PGKQGLVRST 180 PMHVGERQGS DGDAIAVFAS SNIWIDHCFL ASCTDGLIDV IHASTSVTIS NNYFSQHDKV 240 MLLGHNDEYT ADKVMKVTVV FNHFGTGLVQ RLPRVRFGYA HVANNRYDQW EMYAIGGSAD 300 PTIFSEANYF IAPDDAYAKE VTKREVTGGW KNWKWRSSRD VFMNGAYFIQ SGYGSCAPPY 360 AGDQSFTVAP GSLVPALTSD AGPLSCITGK VC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 6.0e-26 | 180 | 310 | 143 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 5.0e-57 | 127 | 310 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-70 | 119 | 314 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002263615.1 | 0 | 8 | 392 | 8 | 397 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002317132.1 | 0 | 1 | 392 | 1 | 393 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331545.1 | 0 | 1 | 392 | 1 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518441.1 | 0 | 16 | 392 | 1 | 377 | Pectate lyase precursor, putative [Ricinus communis] |
RefSeq | XP_002518442.1 | 0 | 20 | 392 | 20 | 390 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 46 | 382 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 46 | 382 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-18 | 64 | 312 | 1 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000000001 | 135 | 310 | 135 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.000000000000008 | 125 | 310 | 73 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |