| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_028825m |
| Family | GH28 |
| Protein Properties | Length: 208 Molecular Weight: 22520.1 Isoelectric Point: 9.0191 |
| Chromosome | Chromosome/Scaffold: 10600 Start: 2377 End: 3113 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 13 | 196 | 0 |
| GCYIGHSNGINIINSNIATGDDCISIGGASEQIRITNVRCGHGHGISVGSLGKTTDEFVSGIFIRNCTFYDTDNGVRIKTWPALHGGMASDMHFEDIMMK NVRNPIIIDQMYCPWNQCNPKLPSKVKISNVTFKNIRGSSATAVAVRLNCSSSFPCQKVELADINLTYIGKEGPVKSLCANVKP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 208 Download |
| MVRTVIKGYR FSGCYIGHSN GINIINSNIA TGDDCISIGG ASEQIRITNV RCGHGHGISV 60 GSLGKTTDEF VSGIFIRNCT FYDTDNGVRI KTWPALHGGM ASDMHFEDIM MKNVRNPIII 120 DQMYCPWNQC NPKLPSKVKI SNVTFKNIRG SSATAVAVRL NCSSSFPCQK VELADINLTY 180 IGKEGPVKSL CANVKPTLKG KLTPTIC* 240 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 5.0e-42 | 31 | 204 | 175 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 2.0e-45 | 31 | 207 | 178 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 3.0e-46 | 31 | 207 | 179 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-61 | 30 | 195 | 167 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 9.0e-65 | 30 | 207 | 180 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAA89476.1 | 0 | 13 | 207 | 198 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89477.1 | 0 | 13 | 207 | 198 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89478.1 | 0 | 13 | 207 | 198 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89479.1 | 0 | 13 | 207 | 198 | 393 | polygalacturonase [Salix gilgiana] |
| RefSeq | XP_002329175.1 | 0 | 2 | 207 | 187 | 393 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 0.0000000000004 | 16 | 194 | 159 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 0.0000000000004 | 16 | 194 | 159 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 0.0000000000004 | 16 | 194 | 159 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 0.0000000000004 | 16 | 194 | 159 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 0.0000000000004 | 16 | 194 | 159 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DC244603 | 179 | 30 | 207 | 0 |
| FG193077 | 179 | 30 | 207 | 0 |
| GW615660 | 181 | 30 | 208 | 0 |
| CO417950 | 171 | 30 | 198 | 0 |
| CU617665 | 178 | 31 | 207 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
