| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_028847m |
| Family | GH10 |
| Protein Properties | Length: 550 Molecular Weight: 61623.3 Isoelectric Point: 6.9296 |
| Chromosome | Chromosome/Scaffold: 00396 Start: 149343 End: 152031 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH10 | 197 | 479 | 0 |
| QTQSSLPFGCGMNHHILESEAYKNWFTSRFKYTTFTNEMKWYSTEIIQGREDYTVADTMVRFAKRHGISIRGHNILWDNPKYQPDWVKNLSPNDLRKAAA KRINSVVSRYAGKLIAWDVMNENLHFSFYEDKLGANASAEYFSRAFQLDPKTGLFMNEFNTIEDRRDEAASPTNYKRRLEQILSYPGNKGILAGIGVQGH FIYGQPDLAYMRASLDILASNGLPIWLTEVSLEAGPNQAEYFEQVLREGHSHPGVEGIIMFAGPEIAGFNATTLADKDFKNTP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 550 Download |
| MSIGAYWCLK EPQRAQYGGG IIANPEFTHT LEGWNVHGEG TIREGISKNG NRYIIAHGRT 60 QSLDGASQTV QFVEGNLYTF SVWVQINRGS ESVAAVLRTA AGELIRVGQV IARDGCWSFL 120 KGGVFANFSG PAELLFQCKN TNVEIWIDNV SLQPFTMEQW RSHQDEIIQK EHKRKVTFQV 180 KFANKTAVKG AVVSIKQTQS SLPFGCGMNH HILESEAYKN WFTSRFKYTT FTNEMKWYST 240 EIIQGREDYT VADTMVRFAK RHGISIRGHN ILWDNPKYQP DWVKNLSPND LRKAAAKRIN 300 SVVSRYAGKL IAWDVMNENL HFSFYEDKLG ANASAEYFSR AFQLDPKTGL FMNEFNTIED 360 RRDEAASPTN YKRRLEQILS YPGNKGILAG IGVQGHFIYG QPDLAYMRAS LDILASNGLP 420 IWLTEVSLEA GPNQAEYFEQ VLREGHSHPG VEGIIMFAGP EIAGFNATTL ADKDFKNTPA 480 GDVVDKLINE WKATTAELTT DSEGSIEVSL FHGDYNITVK DPLSNSSTSW NYNLRKDDKG 540 GNVHILINA* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| pfam02018 | CBM_4_9 | 0.007 | 19 | 103 | 92 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. |
| COG3693 | XynA | 5.0e-32 | 233 | 425 | 206 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] |
| pfam00331 | Glyco_hydro_10 | 6.0e-50 | 203 | 484 | 309 | + Glycosyl hydrolase family 10. |
| smart00633 | Glyco_10 | 8.0e-76 | 235 | 484 | 272 | + Glycosyl hydrolase family 10. |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002313181.1 | 0 | 8 | 549 | 34 | 575 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002313182.1 | 0 | 8 | 536 | 5 | 533 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002313183.1 | 0 | 42 | 537 | 1 | 496 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002532419.1 | 0 | 1 | 548 | 1 | 549 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
| RefSeq | XP_002532422.1 | 0 | 8 | 537 | 23 | 552 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 4e-24 | 204 | 484 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1tux_A | 2e-21 | 204 | 488 | 18 | 301 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1v0n_A | 6e-21 | 199 | 432 | 11 | 243 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1v0m_A | 6e-21 | 199 | 432 | 11 | 243 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1v0l_A | 6e-21 | 199 | 432 | 11 | 243 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
| Hydropathy |
|---|
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DV141191 | 250 | 193 | 442 | 0 |
| DV134092 | 256 | 34 | 289 | 0 |
| ES830806 | 291 | 84 | 372 | 0 |
| DV156862 | 246 | 42 | 287 | 0 |
| ES830806 | 93 | 370 | 459 | 0.23 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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