y
Basic Information | |
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Species | Manihot esculenta |
Cazyme ID | cassava4.1_028890m |
Family | GH28 |
Protein Properties | Length: 389 Molecular Weight: 41594.6 Isoelectric Point: 5.5328 |
Chromosome | Chromosome/Scaffold: 04269 Start: 146562 End: 149268 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 50 | 370 | 0 |
NATCNDSDTPTMIIPDGKTFLVHQVTLAGPCKSTNVNFQLSGKIIAPAPIAWNGRDSGRWLAFRQVDGLIIAGTSNGLLDGSGKAWWDISCKHNPGKAGC NHLAPTILGFENCNNINMRGIRTVQSGGVHIRFHSCEQVELDSLNLQSPGDSPNTDGIHISHSKSFFINNSIIGTGDDCISIVDRSYNINITYIDCGPGH GISIGSLGQKGEEVDVNNITVGRGQVQNVQFSDIIFKEVQNPIIIDQHYTESGNTPSPPSNVGVHINGVQYLGLNGTSKTQAAINLNCSENVACTNIRLE NIELKSATPGEEVKSSCNNAF |
Full Sequence |
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Protein Sequence Length: 389 Download |
MEIFIIFYIL SLISAIFNGV SSKNTYDILS YGAVGDGKTD DTLAFVKTWN ATCNDSDTPT 60 MIIPDGKTFL VHQVTLAGPC KSTNVNFQLS GKIIAPAPIA WNGRDSGRWL AFRQVDGLII 120 AGTSNGLLDG SGKAWWDISC KHNPGKAGCN HLAPTILGFE NCNNINMRGI RTVQSGGVHI 180 RFHSCEQVEL DSLNLQSPGD SPNTDGIHIS HSKSFFINNS IIGTGDDCIS IVDRSYNINI 240 TYIDCGPGHG ISIGSLGQKG EEVDVNNITV GRGQVQNVQF SDIIFKEVQN PIIIDQHYTE 300 SGNTPSPPSN VGVHINGVQY LGLNGTSKTQ AAINLNCSEN VACTNIRLEN IELKSATPGE 360 EVKSSCNNAF GSAQGVVEPS SCLRQQGF* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 1.0e-72 | 19 | 382 | 387 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 4.0e-77 | 21 | 383 | 386 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 1.0e-80 | 19 | 373 | 376 | + polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-81 | 22 | 379 | 377 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 4.0e-94 | 21 | 383 | 383 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD55472.1 | 0 | 29 | 383 | 1 | 381 | AC009322_12 Similar to polygalacturonases [Arabidopsis thaliana] |
GenBank | ABM67700.1 | 0 | 9 | 383 | 36 | 425 | polygalacturonase [Citrus sinensis] |
DDBJ | BAC57279.1 | 0 | 21 | 382 | 48 | 423 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
RefSeq | XP_002517618.1 | 0 | 16 | 363 | 1 | 354 | polygalacturonase, putative [Ricinus communis] |
RefSeq | XP_002517618.1 | 0 | 154 | 383 | 470 | 717 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rmg_A | 0.00000000000004 | 22 | 372 | 17 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1bhe_A | 0.00000000000005 | 126 | 355 | 117 | 363 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.00000000001 | 101 | 368 | 58 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.00000000001 | 101 | 368 | 58 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.00000000001 | 101 | 368 | 58 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |