| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_028947m |
| Family | GH28 |
| Protein Properties | Length: 466 Molecular Weight: 51304.7 Isoelectric Point: 8.7688 |
| Chromosome | Chromosome/Scaffold: 03055 Start: 228058 End: 230794 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 94 | 428 | 0 |
| KAACEVPGATVEIPAEFKFLIKPITLQGPCMPHLVLQIDGTLLAPPEVGSWPKSSLFQWLNFKWVHNFTIQGSGTVNGQGFDWWTPFNVFFIQKTSKHIP DMKPTALRFYASYNVTVQDIEIVNSPQCHLKFDNSKGIKVNNITISSPEDSPNTDGIHLQNTQDVEIQHSNIGSGDDCISIQTGCSNIHVHHINCGPGHG ISVGGLGKEKSVACVSNVIVENVWLQNTLAGSRIKTWQGGIGLVKNITFSNIQVSNVKYPIIIDQFYCDKHICKNQTEAVAISGVRYDQIIGSYTTQPIY LACSSTVPCMDVDLINIQLKPSPEYRSFKQALCWN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 466 Download |
| MRRNKSISLL LFIFVTITAF TMFSIIVEAR KQHSKKTKPN KHRKDSPTIP GPAPAPLPQR 60 GSCPSQSSIF NILSFGAKGD GGSDDSKALL SAWKAACEVP GATVEIPAEF KFLIKPITLQ 120 GPCMPHLVLQ IDGTLLAPPE VGSWPKSSLF QWLNFKWVHN FTIQGSGTVN GQGFDWWTPF 180 NVFFIQKTSK HIPDMKPTAL RFYASYNVTV QDIEIVNSPQ CHLKFDNSKG IKVNNITISS 240 PEDSPNTDGI HLQNTQDVEI QHSNIGSGDD CISIQTGCSN IHVHHINCGP GHGISVGGLG 300 KEKSVACVSN VIVENVWLQN TLAGSRIKTW QGGIGLVKNI TFSNIQVSNV KYPIIIDQFY 360 CDKHICKNQT EAVAISGVRY DQIIGSYTTQ PIYLACSSTV PCMDVDLINI QLKPSPEYRS 420 FKQALCWNSY GKSQAPLVPS SIDYCLRRDG RSVKRTSRSS HEHMC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 8.0e-71 | 65 | 413 | 353 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03010 | PLN03010 | 1.0e-73 | 69 | 412 | 351 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 5.0e-81 | 92 | 439 | 353 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-81 | 102 | 412 | 314 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 2.0e-98 | 92 | 459 | 375 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_189293.1 | 0 | 28 | 465 | 29 | 468 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002266099.1 | 0 | 28 | 465 | 29 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002312682.1 | 0 | 30 | 465 | 31 | 466 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002315680.1 | 0 | 70 | 453 | 1 | 378 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527898.1 | 0 | 1 | 465 | 1 | 477 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 6e-26 | 160 | 364 | 110 | 318 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 8e-20 | 71 | 447 | 22 | 361 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 2iq7_G | 2e-18 | 172 | 398 | 83 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 2e-18 | 172 | 398 | 83 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 2e-18 | 172 | 398 | 83 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
