| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_029037m |
| Family | GH28 |
| Protein Properties | Length: 158 Molecular Weight: 17131.1 Isoelectric Point: 6.5015 |
| Chromosome | Chromosome/Scaffold: 11399 Start: 21097 End: 21570 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 2 | 148 | 0 |
| LRFDFITNSVVQDVTSLDSKNFHVNVLDGKNLTFDHFTITAPGDSVNTDGIHIGHSNRINIINSNIATGNDCISIGGASEQIRIKNVRCGHGHGISMGSL GKTTDEFVSGIFVRNCTFYDTDNGVRIKTWPALHGGMASDMHFEDFK | |||
| Full Sequence |
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| Protein Sequence Length: 158 Download |
| SLRFDFITNS VVQDVTSLDS KNFHVNVLDG KNLTFDHFTI TAPGDSVNTD GIHIGHSNRI 60 NIINSNIATG NDCISIGGAS EQIRIKNVRC GHGHGISMGS LGKTTDEFVS GIFVRNCTFY 120 DTDNGVRIKT WPALHGGMAS DMHFEDFKTP SSLFLIQ* 180 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 2.0e-21 | 9 | 146 | 139 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 2.0e-21 | 1 | 148 | 149 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 4.0e-25 | 12 | 148 | 138 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 2.0e-36 | 1 | 146 | 148 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 9.0e-41 | 1 | 146 | 147 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAA89476.1 | 0 | 2 | 147 | 149 | 295 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89477.1 | 0 | 2 | 147 | 149 | 295 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89478.1 | 0 | 2 | 147 | 149 | 295 | polygalacturonase [Salix gilgiana] |
| RefSeq | XP_002329175.1 | 0 | 2 | 147 | 149 | 295 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002333303.1 | 0 | 2 | 147 | 149 | 295 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.0000000003 | 9 | 130 | 161 | 283 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_B | 0.000000004 | 7 | 151 | 112 | 258 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_A | 0.000000004 | 7 | 151 | 112 | 258 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ia5_A | 0.000000004 | 7 | 151 | 112 | 258 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| PDB | 2iq7_G | 0.00000001 | 35 | 130 | 137 | 234 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GW611463 | 159 | 1 | 156 | 0 |
| GD088686 | 148 | 1 | 147 | 0 |
| GO513613 | 149 | 1 | 147 | 0 |
| FC885548 | 148 | 2 | 148 | 2.8026e-45 |
| CU617067 | 148 | 1 | 147 | 4.2039e-45 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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