| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_029320m |
| Family | GH28 |
| Protein Properties | Length: 163 Molecular Weight: 17369.9 Isoelectric Point: 6.4804 |
| Chromosome | Chromosome/Scaffold: 07465 Start: 29953 End: 30531 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 2 | 149 | 0 |
| KVTCGPGHGISIGSLGKYENEEPVSGINVADCTLKSTTNGVRIKTWPALFPNSASDIHFQDINMENVSNPIIIDQVYCPWDKCNKKEPSKVKISDVSFKN IKGTSATALAVQLICSSGIPCEKVELTDIDLTYSGPQGPAKSECIDVK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 163 Download |
| TKVTCGPGHG ISIGSLGKYE NEEPVSGINV ADCTLKSTTN GVRIKTWPAL FPNSASDIHF 60 QDINMENVSN PIIIDQVYCP WDKCNKKEPS KVKISDVSFK NIKGTSATAL AVQLICSSGI 120 PCEKVELTDI DLTYSGPQGP AKSECIDVKP IITGKMIPEG CK* 180 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 5.0e-34 | 3 | 132 | 130 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 1.0e-38 | 1 | 161 | 161 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 5.0e-40 | 2 | 161 | 161 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-54 | 1 | 149 | 149 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 2.0e-62 | 1 | 161 | 163 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAA89476.1 | 0 | 1 | 161 | 233 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89477.1 | 0 | 1 | 161 | 233 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89478.1 | 0 | 1 | 161 | 233 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89479.1 | 0 | 1 | 161 | 233 | 393 | polygalacturonase [Salix gilgiana] |
| RefSeq | XP_002329175.1 | 0 | 1 | 161 | 233 | 393 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.00000001 | 6 | 133 | 248 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_B | 0.00000005 | 5 | 148 | 198 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_A | 0.00000005 | 5 | 148 | 198 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ia5_A | 0.00000005 | 5 | 148 | 198 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| PDB | 1czf_B | 0.0000001 | 1 | 133 | 215 | 345 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GW615660 | 161 | 2 | 161 | 0 |
| GW619150 | 156 | 2 | 156 | 0 |
| EE256886 | 162 | 1 | 162 | 0 |
| CU617665 | 160 | 2 | 161 | 0 |
| CU533490 | 158 | 4 | 161 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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