| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_029354m |
| Family | PL1 |
| Protein Properties | Length: 342 Molecular Weight: 38318.5 Isoelectric Point: 7.1965 |
| Chromosome | Chromosome/Scaffold: 03328 Start: 451 End: 2662 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 135 | 334 | 0 |
| WIVFPSNMLIKLSQELIFNSYKTLDGRGANVHIVGGGCITLQYITNVIIHNIHIHHCVPSGNTNVRSSPTHYGYRTKSDGDGISIFGSKDIWIDHCSLSH CKDGLIDAVMGSTGITISNNFFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTRWEMYAIGGSGNPTINSQGNRYTA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 342 Download |
| MLHIFFILLL SSFSLLCMPM VNFTFPIPHP NPDEVAQQVQ RRVNASMSRR QMLQISEKDQ 60 STCLTGNPID DCWKCDPDWA NNRQRLADCA IGFGQYAMGG KNGKYYIVTD SSDDDAVNPK 120 PGTLRYAVIQ VEPLWIVFPS NMLIKLSQEL IFNSYKTLDG RGANVHIVGG GCITLQYITN 180 VIIHNIHIHH CVPSGNTNVR SSPTHYGYRT KSDGDGISIF GSKDIWIDHC SLSHCKDGLI 240 DAVMGSTGIT ISNNFFSHHN EVMLLGHSDD YLPDSGMQVT IAFNHFGEKL VQRMPRCRRG 300 YIHVVNNDFT RWEMYAIGGS GNPTINSQGN RYTAPTDRNA KE 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 6.0e-22 | 154 | 330 | 189 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 3.0e-61 | 148 | 332 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 8.0e-71 | 141 | 335 | 206 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM61400.1 | 0 | 4 | 342 | 9 | 348 | pectate lyase-like protein [Arabidopsis thaliana] |
| EMBL | CAB64222.1 | 0 | 16 | 342 | 1 | 329 | pectate lyase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_566979.1 | 0 | 7 | 342 | 9 | 349 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002265853.1 | 0 | 4 | 342 | 121 | 460 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002519460.1 | 0 | 1 | 342 | 1 | 345 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 67 | 342 | 2 | 278 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 67 | 342 | 2 | 278 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 4e-16 | 136 | 332 | 50 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.00000000000002 | 160 | 307 | 138 | 299 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3krg_A | 0.000000000002 | 157 | 307 | 130 | 293 | A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase |
