| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_029456m |
| Family | GH28 |
| Protein Properties | Length: 395 Molecular Weight: 42091.8 Isoelectric Point: 8.739 |
| Chromosome | Chromosome/Scaffold: 12677 Start: 90328 End: 91861 |
| Description | polygalacturonase 4 |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 50 | 383 | 0 |
| KDSCKNDGPAKIRVPKGTFMTAPITFQGPCKSTKPIIVEVQGTVKGTNDLSKYTEDTWFLFEKINGVVLTGGGTFDGQGSSVWKNTDCEKKKDCGRLPTS IKFQGVTNAVVSEITSINSKHFHFHITDCTNFKASNLNIVASGESPNTDGMHISDTNGVVVTNSKIGTGDDCISIGQGVTNAAISKIFCGPGHGLSIGSL GKYKNEADVKDVTISDCTLFNTTNGLRIKTWADSPPSAASSITFKDIIMKSVKNPIIIDQKYGSRSSTKPSRVKISNVHYNNIRGTSTSKVAVNFLCSPS VPCEKIELDDVDLTYTGIKKSKSPISASCVNAKV | |||
| Full Sequence |
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| Protein Sequence Length: 395 Download |
| KIHCDIGVGG RRGRVEAADA STTKVFDITT YGAKGDDKTD CTMAFMKAWK DSCKNDGPAK 60 IRVPKGTFMT APITFQGPCK STKPIIVEVQ GTVKGTNDLS KYTEDTWFLF EKINGVVLTG 120 GGTFDGQGSS VWKNTDCEKK KDCGRLPTSI KFQGVTNAVV SEITSINSKH FHFHITDCTN 180 FKASNLNIVA SGESPNTDGM HISDTNGVVV TNSKIGTGDD CISIGQGVTN AAISKIFCGP 240 GHGLSIGSLG KYKNEADVKD VTISDCTLFN TTNGLRIKTW ADSPPSAASS ITFKDIIMKS 300 VKNPIIIDQK YGSRSSTKPS RVKISNVHYN NIRGTSTSKV AVNFLCSPSV PCEKIELDDV 360 DLTYTGIKKS KSPISASCVN AKVTFIGAHP PGCE* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 2.0e-83 | 18 | 393 | 383 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-86 | 17 | 393 | 390 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 6.0e-88 | 20 | 393 | 380 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-99 | 53 | 384 | 334 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 2.0e-133 | 19 | 393 | 381 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI36886.1 | 0 | 14 | 393 | 34 | 414 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002272193.1 | 0 | 7 | 394 | 38 | 427 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301488.1 | 0 | 43 | 393 | 2 | 352 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301489.1 | 0 | 6 | 393 | 27 | 412 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002336609.1 | 0 | 44 | 362 | 1 | 318 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ib4_B | 3e-21 | 121 | 380 | 81 | 332 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1ib4_A | 3e-21 | 121 | 380 | 81 | 332 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1ia5_A | 3e-21 | 121 | 380 | 81 | 332 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| PDB | 1nhc_F | 3e-18 | 116 | 380 | 72 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 3e-18 | 116 | 380 | 72 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
|---|
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GR450321 | 280 | 85 | 364 | 0 |
| GR455550 | 271 | 44 | 314 | 0 |
| GR458020 | 271 | 44 | 314 | 0 |
| EE107069 | 247 | 38 | 284 | 0 |
| GR455314 | 267 | 100 | 366 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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