| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_029929m |
| Family | GH28 |
| Protein Properties | Length: 249 Molecular Weight: 26922 Isoelectric Point: 9.2878 |
| Chromosome | Chromosome/Scaffold: 11581 Start: 1074147 End: 1075557 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 132 | 235 | 3.8e-26 |
| IKSWARPSNGFVQRVRFLDAIMHNVQNPIIIDQNYCPHNLNCPNKVSGVKVNDVIYQGIRGTSATPIAIKFDCSSKNPCSAIRLQNVNLTYSNQAAQSSC VNVV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 249 Download |
| MAGSLFFFFF FFFFIFFALH VNSSFAATNF NVLFYGAKPN GVTDSTKPFL DAWAAACSST 60 GSTMIYVPKG RYLLGPMIFR GACKSSDITI RIDGTLVAPA DYHILGQAAN WFSFEGVAGV 120 SIVGGALDAK GIKSWARPSN GFVQRVRFLD AIMHNVQNPI IIDQNYCPHN LNCPNKVSGV 180 KVNDVIYQGI RGTSATPIAI KFDCSSKNPC SAIRLQNVNL TYSNQAAQSS CVNVVGKRIG 240 LVKPDNCL* 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 4.0e-21 | 26 | 221 | 201 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02793 | PLN02793 | 2.0e-23 | 132 | 248 | 118 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 3.0e-26 | 132 | 247 | 120 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 6.0e-27 | 23 | 220 | 201 | + polygalacturonase | ||
| PLN02155 | PLN02155 | 5.0e-41 | 105 | 248 | 149 | + polygalacturonase | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI23356.1 | 0 | 78 | 248 | 205 | 390 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002315106.1 | 0 | 9 | 141 | 11 | 144 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002315106.1 | 0 | 105 | 248 | 250 | 397 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002524365.1 | 0 | 11 | 141 | 4 | 134 | Polygalacturonase precursor, putative [Ricinus communis] |
| RefSeq | XP_002524365.1 | 0 | 92 | 248 | 227 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Transmembrane Domains | ||||
|---|---|---|---|---|
| Start | End | |||
| 5 | 27 | |||
| Signal Peptide | ||||
|---|---|---|---|---|
| Cleavage Site | ||||
| 26 | ||||
| Hydropathy |
|---|
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FG508808 | 162 | 92 | 249 | 0 |
| FG442012 | 168 | 85 | 248 | 0 |
| FG510212 | 161 | 92 | 248 | 0 |
| EY134602 | 161 | 92 | 248 | 0 |
| FG508816 | 137 | 115 | 247 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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