| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_030301m |
| Family | GH28 |
| Protein Properties | Length: 319 Molecular Weight: 34781.9 Isoelectric Point: 9.5009 |
| Chromosome | Chromosome/Scaffold: 05929 Start: 36419 End: 37640 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 14 | 307 | 0 |
| SIGLTDLNGTLVALINPSEHAKDNWISFAYIDRFTLSSGGTFNGQGQVAWKQNNCGRNPKCKRLPVVSLIESSRFDFITNSVVHDVTSLDSKNLHVNVLG SKNLTFDRFTITAPGHSINTDGTHIRHSNGINIINLNIATGNYCISISDGSEQIRITNVRCGHGHGISMKSLGKTTDKFVSEIFVRKCTIYDTDNGVRIK TWPALHGGMASDMHFEDIMMKNVCNPIVIDQLPSKVKIANVTFKNIRGSSATAIAIRINCSSSFPCEKVKLTDINLTYRGKEGPAKSLCANVKP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 319 Download |
| MDCNRVVVSK GTYSIGLTDL NGTLVALINP SEHAKDNWIS FAYIDRFTLS SGGTFNGQGQ 60 VAWKQNNCGR NPKCKRLPVV SLIESSRFDF ITNSVVHDVT SLDSKNLHVN VLGSKNLTFD 120 RFTITAPGHS INTDGTHIRH SNGINIINLN IATGNYCISI SDGSEQIRIT NVRCGHGHGI 180 SMKSLGKTTD KFVSEIFVRK CTIYDTDNGV RIKTWPALHG GMASDMHFED IMMKNVCNPI 240 VIDQLPSKVK IANVTFKNIR GSSATAIAIR INCSSSFPCE KVKLTDINLT YRGKEGPAKS 300 LCANVKPTLK GKLTPTMC* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 1.0e-48 | 22 | 315 | 310 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 3.0e-50 | 38 | 318 | 293 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 8.0e-60 | 19 | 318 | 318 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-85 | 4 | 306 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 7.0e-86 | 6 | 318 | 337 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAA89476.1 | 0 | 4 | 318 | 60 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89477.1 | 0 | 4 | 318 | 60 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89478.1 | 0 | 4 | 318 | 60 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89479.1 | 0 | 4 | 318 | 60 | 393 | polygalacturonase [Salix gilgiana] |
| RefSeq | XP_002329175.1 | 0 | 19 | 318 | 87 | 393 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ib4_B | 0.00000000000006 | 4 | 305 | 28 | 333 | A Chain A, Plant Carboxylesterase Aecxe1 From Actinidia Eriantha With Acyl Adduct |
| PDB | 1ib4_A | 0.00000000000006 | 4 | 305 | 28 | 333 | A Chain A, Plant Carboxylesterase Aecxe1 From Actinidia Eriantha With Acyl Adduct |
| PDB | 1ia5_A | 0.00000000000006 | 4 | 305 | 28 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| PDB | 1bhe_A | 0.0000000000004 | 53 | 290 | 117 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 0.000000000003 | 48 | 305 | 73 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EY196848 | 274 | 51 | 312 | 0 |
| EX164190 | 274 | 51 | 312 | 0 |
| EH772281 | 292 | 36 | 312 | 0 |
| GW611463 | 238 | 54 | 279 | 0 |
| GR462194 | 283 | 33 | 302 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
