| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_030372m |
| Family | GH28 |
| Protein Properties | Length: 305 Molecular Weight: 33159.2 Isoelectric Point: 6.7696 |
| Chromosome | Chromosome/Scaffold: 04269 Start: 159315 End: 160802 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 34 | 295 | 0 |
| TDTCKDSDRPVMLIPKGKTFLVHPVTFAGPCKSSQVDVQLSGNVIAPNDPNAWKGLDFGKWLTFQYVDGLTVSGDGLLDGRGKGWWDISCKYNPGKILRF ENCNNVKTTRIRTVQSGGVHLVYFGCQGVEVTSVNINAPDESPNTDGIRLSHSTSVSITDSIIGTGDDCIAMLDRSYNISITRVNCGPGHGISIGSLGGN GDEVDLENITISHINFYNTTNGARIKTWPAGKGQVRNVEFSNIKFKEVENPIIIDQHYGESK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 305 Download |
| MFIVVSSKNY NVLSYGAVGN GNNDDTQAFI KAWTDTCKDS DRPVMLIPKG KTFLVHPVTF 60 AGPCKSSQVD VQLSGNVIAP NDPNAWKGLD FGKWLTFQYV DGLTVSGDGL LDGRGKGWWD 120 ISCKYNPGKI LRFENCNNVK TTRIRTVQSG GVHLVYFGCQ GVEVTSVNIN APDESPNTDG 180 IRLSHSTSVS ITDSIIGTGD DCIAMLDRSY NISITRVNCG PGHGISIGSL GGNGDEVDLE 240 NITISHINFY NTTNGARIKT WPAGKGQVRN VEFSNIKFKE VENPIIIDQH YGESKNSPRQ 300 KTEF* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 4.0e-70 | 11 | 302 | 303 | + polygalacturonase ADPG | ||
| PLN02188 | PLN02188 | 2.0e-74 | 6 | 291 | 295 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 2.0e-84 | 3 | 302 | 302 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 1.0e-91 | 2 | 291 | 291 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 6.0e-92 | 6 | 295 | 297 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD55472.1 | 0 | 13 | 292 | 1 | 298 | AC009322_12 Similar to polygalacturonases [Arabidopsis thaliana] |
| EMBL | CAA20037.1 | 0 | 2 | 291 | 6 | 287 | putative polygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_195292.2 | 0 | 2 | 291 | 16 | 307 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002517618.1 | 0 | 1 | 302 | 1 | 305 | polygalacturonase, putative [Ricinus communis] |
| RefSeq | XP_002517618.1 | 5.04467e-44 | 131 | 303 | 473 | 645 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 1e-20 | 105 | 297 | 113 | 320 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 7e-20 | 86 | 291 | 58 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 7e-20 | 86 | 291 | 58 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 7e-20 | 86 | 291 | 58 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 7e-20 | 86 | 291 | 58 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
|---|
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DY961682 | 268 | 4 | 261 | 0 |
| EL454770 | 277 | 5 | 271 | 0 |
| DT769247 | 254 | 7 | 249 | 0 |
| FC899369 | 301 | 9 | 300 | 0 |
| DV135481 | 288 | 19 | 291 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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