| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_030434m |
| Family | GH28 |
| Protein Properties | Length: 473 Molecular Weight: 50429.8 Isoelectric Point: 6.9057 |
| Chromosome | Chromosome/Scaffold: 04137 Start: 104643 End: 107037 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 109 | 445 | 0 |
| AACKVDGSTIVVPSGAVFLVLPISFSGPNCGEKIIFQLDGKIIASTSSGAWGSGLLQWIEFTKLKGITIRGKGVIDGQGSVWWNDLPTYSPDSGVTSELS AKMPSTKPTALRFYGSTDVTVTGITIQNSPQTHLKFDDCISVQVSGFTAASPENSPHTDGIHLQNSRDVVIYSSNLACGDDCVSIQTGCSNVYVHNVNCG PGHGISIGGLGRDNTKACVSNVTIRDVAIQNTLTGVRIKTWQGGSGSVQGITFSNIQVSGVETPIMIDQFYCDGNKCSNKSSAVAVSDINYVDIRGTYTR NPLHFACSDNLPCTGVSLDTIELKSVGEDAQPFCWNA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 473 Download |
| MGGSNLENLS LITILIIVLP FWSSRIKPCH ARQGKYWRQT ASTVSMSMQS HHHARGLFKF 60 TDSYYISPDE TMATQKGTSS AATFNVLDYG AKGDGHTDDT KAFEAVWAAA CKVDGSTIVV 120 PSGAVFLVLP ISFSGPNCGE KIIFQLDGKI IASTSSGAWG SGLLQWIEFT KLKGITIRGK 180 GVIDGQGSVW WNDLPTYSPD SGVTSELSAK MPSTKPTALR FYGSTDVTVT GITIQNSPQT 240 HLKFDDCISV QVSGFTAASP ENSPHTDGIH LQNSRDVVIY SSNLACGDDC VSIQTGCSNV 300 YVHNVNCGPG HGISIGGLGR DNTKACVSNV TIRDVAIQNT LTGVRIKTWQ GGSGSVQGIT 360 FSNIQVSGVE TPIMIDQFYC DGNKCSNKSS AVAVSDINYV DIRGTYTRNP LHFACSDNLP 420 CTGVSLDTIE LKSVGEDAQP FCWNAYGDLR GTTVPPVHCL QSGKSSKPVV YC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-70 | 116 | 445 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03003 | PLN03003 | 8.0e-73 | 79 | 461 | 392 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 7.0e-73 | 77 | 448 | 378 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 5.0e-78 | 80 | 455 | 381 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 7.0e-93 | 79 | 465 | 397 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD46483.1 | 0 | 76 | 467 | 38 | 432 | polygalacturonase PG1 [Glycine max] |
| GenBank | AAO24262.1 | 0 | 2 | 468 | 4 | 470 | putative style polygalacturonase [Turnera subulata] |
| GenBank | ACU24545.1 | 0 | 76 | 467 | 38 | 432 | unknown [Glycine max] |
| DDBJ | BAH56488.1 | 0 | 10 | 464 | 9 | 494 | polygalacturonase 1 [Prunus persica] |
| RefSeq | XP_002521450.1 | 0 | 23 | 470 | 22 | 463 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 9e-24 | 175 | 417 | 72 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 9e-24 | 175 | 417 | 72 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 9e-24 | 175 | 417 | 72 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 9e-24 | 175 | 417 | 72 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 9e-24 | 175 | 417 | 72 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
