| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_030436m |
| Family | CE8 |
| Protein Properties | Length: 367 Molecular Weight: 40779.8 Isoelectric Point: 9.8683 |
| Chromosome | Chromosome/Scaffold: 08559 Start: 631 End: 2009 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 71 | 356 | 0 |
| IIVSKDGKGEFKTVTDAINSVPLNNKQRVIIKIGPGVYTEKIQIERTKHFITFLGDPKAMPTLAFGGTAHEYGTLASASVAIEPNYFMAVNIIFKNTAPG PNSKKPGAQAVALRVSGDKAAFYNCKMLGFQDTLCDDRGHHFYKNCYIEGTVDFIFGRGRSLYLESHINVVNNKGLTFITAQAKENKSENWGYSFVQCKI TGSASETYLGRAWRAMPEVVFSYTEMGTVINPLGWSNNKRPERERTVFFAEYENSGPGSNFKRRVKFAKKLTDRDAKHFLSLGYIQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 367 Download |
| MVRGRYIDAT YCVLIAILVV ATTVSSDDIT PIPADDSKVS NWFQINVKPW RSRKGTLDPA 60 LEAAEAKSRI IIVSKDGKGE FKTVTDAINS VPLNNKQRVI IKIGPGVYTE KIQIERTKHF 120 ITFLGDPKAM PTLAFGGTAH EYGTLASASV AIEPNYFMAV NIIFKNTAPG PNSKKPGAQA 180 VALRVSGDKA AFYNCKMLGF QDTLCDDRGH HFYKNCYIEG TVDFIFGRGR SLYLESHINV 240 VNNKGLTFIT AQAKENKSEN WGYSFVQCKI TGSASETYLG RAWRAMPEVV FSYTEMGTVI 300 NPLGWSNNKR PERERTVFFA EYENSGPGSN FKRRVKFAKK LTDRDAKHFL SLGYIQGSKW 360 LLPPPM* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02304 | PLN02304 | 9.0e-85 | 70 | 363 | 302 | + probable pectinesterase | ||
| PLN02773 | PLN02773 | 3.0e-86 | 68 | 362 | 311 | + pectinesterase | ||
| PLN02671 | PLN02671 | 3.0e-87 | 68 | 361 | 309 | + pectinesterase | ||
| PLN02682 | PLN02682 | 1.0e-117 | 12 | 363 | 364 | + pectinesterase family protein | ||
| PLN02665 | PLN02665 | 0 | 5 | 365 | 362 | + pectinesterase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002309337.1 | 0 | 12 | 365 | 13 | 367 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002318197.1 | 0 | 7 | 365 | 4 | 363 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002333446.1 | 0 | 4 | 365 | 2 | 364 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002511045.1 | 0 | 6 | 365 | 7 | 365 | Pectinesterase-1 precursor, putative [Ricinus communis] |
| RefSeq | XP_002530224.1 | 0 | 1 | 365 | 1 | 366 | Pectinesterase U1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 9.80909e-45 | 71 | 361 | 9 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 7e-38 | 72 | 361 | 6 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 8e-19 | 74 | 349 | 12 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_A | 8e-19 | 74 | 349 | 12 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntp_B | 8e-19 | 74 | 349 | 12 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
