| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_030858m |
| Family | GH28 |
| Protein Properties | Length: 175 Molecular Weight: 19104.8 Isoelectric Point: 8.3868 |
| Chromosome | Chromosome/Scaffold: 11102 Start: 11497 End: 12199 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 1 | 164 | 0 |
| INIINSNIVTGDDCISIDQESRQVRITNVRCRHGHNISVGSLGNYEKEEAVSGIYVTNCTIYDTDNGVRIKTWPALYGGIASNIPFEDIVMQNVSNPIII DQMYCPWNLCNRKNIRGSSRTPTAVQITCSSSVPYKDIVLSNVNLKYTGSKGSVKSVCTNVKPR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 175 Download |
| INIINSNIVT GDDCISIDQE SRQVRITNVR CRHGHNISVG SLGNYEKEEA VSGIYVTNCT 60 IYDTDNGVRI KTWPALYGGI ASNIPFEDIV MQNVSNPIII DQMYCPWNLC NRKNIRGSSR 120 TPTAVQITCS SSVPYKDIVL SNVNLKYTGS KGSVKSVCTN VKPRIIGMFI PGGC* 180 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 2.0e-32 | 1 | 174 | 188 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 1.0e-33 | 1 | 171 | 183 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 8.0e-38 | 1 | 174 | 188 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-49 | 1 | 162 | 174 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 3.0e-55 | 1 | 174 | 190 | + polygalacturonase/glycoside hydrolase family protein | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAA89476.1 | 0 | 1 | 174 | 207 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89477.1 | 0 | 1 | 174 | 207 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89478.1 | 0 | 1 | 174 | 207 | 393 | polygalacturonase [Salix gilgiana] |
| RefSeq | XP_002310765.1 | 0 | 1 | 174 | 205 | 391 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002329175.1 | 0 | 1 | 174 | 207 | 393 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 0.000000006 | 3 | 161 | 167 | 300 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 0.000000006 | 3 | 161 | 167 | 300 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 0.000000006 | 3 | 161 | 167 | 300 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 0.000000006 | 3 | 161 | 167 | 300 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 0.000000006 | 3 | 161 | 167 | 300 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EE257565 | 178 | 1 | 165 | 0 |
| EE254648 | 178 | 1 | 165 | 0 |
| GW615660 | 189 | 1 | 175 | 0 |
| EE255668 | 174 | 5 | 165 | 0 |
| EE254704 | 171 | 8 | 165 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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