| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_030872m |
| Family | GH28 |
| Protein Properties | Length: 395 Molecular Weight: 42304.3 Isoelectric Point: 4.5042 |
| Chromosome | Chromosome/Scaffold: 04269 Start: 141655 End: 143721 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 48 | 380 | 0 |
| WSDTCKDPDTPTMIIPDGKTFLVHPINLAGPCESTNINVQVSGKIVAPDDPKAWKGLDFGKWLVFQQVDGLIVAGTDDSLLDGSGQAWWDISCKKNPGKI LGFESCNNINMRGIRTVQSGGIHVRFHGCQQAELESLNLQSPGDSPNTDGIHISHSKSFFINNSIIGTGDDCISIVDRSYNINITYINCGPGHGISIGSL GEDGEAVDVHNIAISQINFYNTTNGARIKTWPGGNGLVQNVEFSNIIFNEVANPIIINQYYSDSGKSPPPASNVGVHIDKVQYYGLNGTSKSVVAIDLNC SNYVPCTNIILENIELISATPGEKVDSSCNNAF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 395 Download |
| DPFTILCILS FFLTTFNVVS SNNTYDVINY GAIGDGNTDD TLAFVKAWSD TCKDPDTPTM 60 IIPDGKTFLV HPINLAGPCE STNINVQVSG KIVAPDDPKA WKGLDFGKWL VFQQVDGLIV 120 AGTDDSLLDG SGQAWWDISC KKNPGKILGF ESCNNINMRG IRTVQSGGIH VRFHGCQQAE 180 LESLNLQSPG DSPNTDGIHI SHSKSFFINN SIIGTGDDCI SIVDRSYNIN ITYINCGPGH 240 GISIGSLGED GEAVDVHNIA ISQINFYNTT NGARIKTWPG GNGLVQNVEF SNIIFNEVAN 300 PIIINQYYSD SGKSPPPASN VGVHIDKVQY YGLNGTSKSV VAIDLNCSNY VPCTNIILEN 360 IELISATPGE KVDSSCNNAF GSAKGVVEPN SCLR* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 2.0e-78 | 9 | 393 | 395 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 1.0e-88 | 5 | 389 | 392 | + polygalacturonase ADPG | ||
| PLN03010 | PLN03010 | 2.0e-92 | 16 | 383 | 369 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 6.0e-95 | 9 | 393 | 389 | + Probable polygalacturonase At3g15720 | ||
| PLN02793 | PLN02793 | 2.0e-109 | 20 | 393 | 381 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD55472.1 | 0 | 28 | 393 | 1 | 381 | AC009322_12 Similar to polygalacturonases [Arabidopsis thaliana] |
| GenBank | ABR18059.1 | 0 | 18 | 394 | 82 | 459 | unknown [Picea sitchensis] |
| RefSeq | NP_178131.1 | 0 | 62 | 393 | 6 | 336 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002517618.1 | 0 | 6 | 393 | 393 | 717 | polygalacturonase, putative [Ricinus communis] |
| RefSeq | XP_002517618.1 | 0 | 16 | 371 | 2 | 355 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 3e-21 | 134 | 365 | 133 | 363 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 5e-17 | 99 | 336 | 56 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 5e-17 | 99 | 336 | 56 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 5e-17 | 99 | 336 | 56 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 5e-17 | 99 | 336 | 56 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
