| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_030897m |
| Family | GH28 |
| Protein Properties | Length: 394 Molecular Weight: 41487 Isoelectric Point: 8.5888 |
| Chromosome | Chromosome/Scaffold: 10126 Start: 31217 End: 32680 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 52 | 382 | 0 |
| WTQACGSTKPATLYVPPGRFFLRNVAFKGPCKNNAILVLIAGTLVAPSDYRVIGNVRDWIFFQYVNGVTVSGGVLDGQGPGLWACKNSGKNCPGGATSLS FSNSDNIEINGLTSLNSQLYHIVINGCNNVKVQGVTVSASGNSPNTDGIHVQLSSGVSILNSRIRTGDDCVSIGAGTSNLRIEKVACGPGHGISIGSLGK DSEEPGVENVTVKTVTITGTQNGLRIKSWGRPSSGFVRNIIFQHAIMTNVQNPIVIDQHYCPNNENCPGQESGVKISDVTYQDIHGTSSTQVAVKFDCSK KNPCTGIKMQDVKLTYKNQPADASCNNADGS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 394 Download |
| MAKQQSFSLL VVIILIILFT ISSANAARYS VVTYGAKPDG RTDSTKAFLA AWTQACGSTK 60 PATLYVPPGR FFLRNVAFKG PCKNNAILVL IAGTLVAPSD YRVIGNVRDW IFFQYVNGVT 120 VSGGVLDGQG PGLWACKNSG KNCPGGATSL SFSNSDNIEI NGLTSLNSQL YHIVINGCNN 180 VKVQGVTVSA SGNSPNTDGI HVQLSSGVSI LNSRIRTGDD CVSIGAGTSN LRIEKVACGP 240 GHGISIGSLG KDSEEPGVEN VTVKTVTITG TQNGLRIKSW GRPSSGFVRN IIFQHAIMTN 300 VQNPIVIDQH YCPNNENCPG QESGVKISDV TYQDIHGTSS TQVAVKFDCS KKNPCTGIKM 360 QDVKLTYKNQ PADASCNNAD GSATGFVQPS SCL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-92 | 56 | 379 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 4.0e-92 | 30 | 389 | 370 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 4.0e-99 | 31 | 393 | 371 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 1.0e-113 | 24 | 392 | 376 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 4.0e-147 | 29 | 393 | 366 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABD33834.1 | 0 | 1 | 393 | 1 | 393 | polygalacturonase [Prunus domestica subsp. insititia] |
| RefSeq | XP_002309718.1 | 0 | 15 | 393 | 14 | 392 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002529089.1 | 0 | 1 | 393 | 1 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
| RefSeq | XP_002529090.1 | 0 | 3 | 393 | 5 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
| RefSeq | XP_002529091.1 | 0 | 10 | 393 | 8 | 392 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 1e-22 | 150 | 366 | 154 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 5e-16 | 123 | 376 | 77 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 5e-16 | 123 | 376 | 77 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 5e-16 | 123 | 376 | 77 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 5e-16 | 123 | 376 | 77 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
