| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_030899m |
| Family | GH28 |
| Protein Properties | Length: 222 Molecular Weight: 24593.1 Isoelectric Point: 9.8268 |
| Chromosome | Chromosome/Scaffold: 11102 Start: 1655 End: 2640 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 55 | 174 | 2.8e-21 |
| SGPCKGAMHLQVEGMLVAPAKASQHRKNSWVTLRYLDRLTVSGGGAFDGQGEIAWEQAHCGDRCKTPLPINLRFDFVTNSIVEDVTSIDSKQLHFSRFSV KAPGHSLNTNGIHIGRSEGI | |||
| Full Sequence |
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| Protein Sequence Length: 222 Download |
| MGSKAHVCTV YLLLFTNEAR PNTFDVTKYG AKAGSDITKA LLSAWKEGYA VAGSSGPCKG 60 AMHLQVEGML VAPAKASQHR KNSWVTLRYL DRLTVSGGGA FDGQGEIAWE QAHCGDRCKT 120 PLPINLRFDF VTNSIVEDVT SIDSKQLHFS RFSVKAPGHS LNTNGIHIGR SEGIDRAYFS 180 PYYHDLIDIL GVKRQSRENA LKTAKKCQIW KVSKKESFQI WK |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 1.0e-13 | 11 | 174 | 196 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 4.0e-16 | 21 | 174 | 189 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 8.0e-17 | 19 | 174 | 197 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-27 | 35 | 174 | 153 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 3.0e-30 | 23 | 180 | 190 | + polygalacturonase/glycoside hydrolase family protein | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAA89476.1 | 1.99993e-41 | 16 | 174 | 22 | 207 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89477.1 | 3.00018e-42 | 16 | 174 | 22 | 207 | polygalacturonase [Salix gilgiana] |
| RefSeq | XP_002329175.1 | 8.40779e-45 | 12 | 174 | 18 | 207 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002333303.1 | 4.2039e-45 | 12 | 174 | 18 | 207 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002526193.1 | 3.00018e-42 | 1 | 175 | 1 | 206 | hypothetical protein RCOM_0764760 [Ricinus communis] |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| EE255109 | 191 | 16 | 175 | 0 |
| GW618604 | 195 | 12 | 175 | 1.4013e-45 |
| GW617460 | 195 | 12 | 175 | 1.4013e-45 |
| EE255499 | 208 | 1 | 175 | 5.99756e-43 |
| EE259861 | 208 | 1 | 175 | 5.99756e-43 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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