| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_030943m |
| Family | GH28 |
| Protein Properties | Length: 393 Molecular Weight: 41398 Isoelectric Point: 8.5854 |
| Chromosome | Chromosome/Scaffold: 10126 Start: 37079 End: 38554 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 51 | 381 | 0 |
| WTQACGSTKPTTLYVPRGKFLLRNVVFNGPCKNNAILVFIAGTLVAPSDYRVIGNAENWISFQYVNGVTVSGGVLDGQGPGLWACKNSGKNCPGGATSLR FSNSDNIVVSGLTSLNSQLYHVVFNGCNNVKVQGVTLSASGNSPNTDGIHVQLSSGVTILNSRIRTGDDCVSIGAGTANLRIENVACGPGHGISIGSLGK DLQEPGVENVTVKTVTITGTQNGLRIKTWGRPSSGFVRNVLFQHVIMNNVQNPIVIDQNYCPDNENCPGQDSGVKISDVTYQDVHGTSATKVAVRFDCSK KKPCTGIKMEDVKLTYKNLPADASCKNADGT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 393 Download |
| MAKDHISSLL AAVLTMFYTI SLATAARYSV LNYGAMSDGR TDSTKAFLAA WTQACGSTKP 60 TTLYVPRGKF LLRNVVFNGP CKNNAILVFI AGTLVAPSDY RVIGNAENWI SFQYVNGVTV 120 SGGVLDGQGP GLWACKNSGK NCPGGATSLR FSNSDNIVVS GLTSLNSQLY HVVFNGCNNV 180 KVQGVTLSAS GNSPNTDGIH VQLSSGVTIL NSRIRTGDDC VSIGAGTANL RIENVACGPG 240 HGISIGSLGK DLQEPGVENV TVKTVTITGT QNGLRIKTWG RPSSGFVRNV LFQHVIMNNV 300 QNPIVIDQNY CPDNENCPGQ DSGVKISDVT YQDVHGTSAT KVAVRFDCSK KKPCTGIKME 360 DVKLTYKNLP ADASCKNADG TAFGVIQPSS CL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 4.0e-95 | 3 | 388 | 396 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-97 | 55 | 378 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 2.0e-99 | 30 | 392 | 371 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 3.0e-114 | 28 | 391 | 370 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 1.0e-149 | 1 | 392 | 393 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC64184.1 | 0 | 8 | 392 | 6 | 393 | endopolygalacturonase [Prunus persica] |
| RefSeq | XP_002309718.1 | 0 | 1 | 392 | 1 | 392 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002529089.1 | 0 | 1 | 392 | 1 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
| RefSeq | XP_002529090.1 | 0 | 1 | 392 | 1 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
| RefSeq | XP_002529091.1 | 0 | 13 | 392 | 13 | 392 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 9e-26 | 149 | 365 | 154 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 4e-17 | 30 | 383 | 23 | 358 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1ib4_B | 1e-16 | 121 | 375 | 80 | 339 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1ib4_A | 1e-16 | 121 | 375 | 80 | 339 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1ia5_A | 1e-16 | 121 | 375 | 80 | 339 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
