| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_030991m |
| Family | GH28 |
| Protein Properties | Length: 215 Molecular Weight: 23401 Isoelectric Point: 8.8153 |
| Chromosome | Chromosome/Scaffold: 11399 Start: 11083 End: 11912 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 8 | 203 | 0 |
| VAVRFSGRYNVNVLGGKNLTFDCFTISAPGDSVNTDGIHIGHSNGINIINSNIATGDDCISIGGKTTDEFVSGIFIRNCTFYDTNNGVRIKTWPALHRGI ASNMHFEDIMMKNVRNPIVIDQVYCPRNQCNPKLPSKVKIANVTFENIRGSLATAVAVRLNCNSSFPCQKVELADINLMYRGKEGPAKSLCANVKP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 215 Download |
| PIWILAPVAV RFSGRYNVNV LGGKNLTFDC FTISAPGDSV NTDGIHIGHS NGINIINSNI 60 ATGDDCISIG GKTTDEFVSG IFIRNCTFYD TNNGVRIKTW PALHRGIASN MHFEDIMMKN 120 VRNPIVIDQV YCPRNQCNPK LPSKVKIANV TFENIRGSLA TAVAVRLNCN SSFPCQKVEL 180 ADINLMYRGK EGPAKSLCAN VKPTLKEKLT PTIC* 240 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 4.0e-29 | 33 | 198 | 192 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 2.0e-31 | 4 | 202 | 224 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 2.0e-33 | 22 | 214 | 218 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 6.0e-48 | 33 | 202 | 198 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-50 | 18 | 202 | 210 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAA89476.1 | 0 | 4 | 214 | 158 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89477.1 | 0 | 4 | 214 | 158 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89478.1 | 0 | 4 | 214 | 158 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89479.1 | 0 | 8 | 214 | 162 | 393 | polygalacturonase [Salix gilgiana] |
| RefSeq | XP_002329175.1 | 0 | 13 | 214 | 167 | 393 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.000000002 | 32 | 153 | 191 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 0.0000006 | 28 | 201 | 137 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 0.0000006 | 28 | 201 | 137 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 0.0000006 | 28 | 201 | 137 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 0.0000006 | 28 | 201 | 137 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DC244603 | 215 | 25 | 214 | 0 |
| GW615660 | 211 | 31 | 215 | 0 |
| FG193077 | 216 | 24 | 214 | 0 |
| GW619150 | 205 | 31 | 209 | 0 |
| BJ569915 | 223 | 16 | 213 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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