| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_030998m |
| Family | GH28 |
| Protein Properties | Length: 413 Molecular Weight: 45184.6 Isoelectric Point: 8.7782 |
| Chromosome | Chromosome/Scaffold: 04269 Start: 90832 End: 93173 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 47 | 379 | 0 |
| KKACSFPARTRIVIPAGVTLLVHPVDLAGPCKSRITLNISGTVVAPKDPAYWKGLNPRKWLYFHGVNHLTIDGGGTVNGMGRRWWARSCKINPENPCRHA PTAMTFHKCKDLRVRNIRIVYGQQMHIAFTNCIRVMVFGVLVTSPAFSPNTDGIHISASRRVEVRDSIVQTGDDCISIVSNSSRIRIKNFACGPGHGISI GSLGKYHSSSKVHDILVDGAFLSNTDNGLRIKTWQGGSGEASRIKFQNVLMENVSNPIIIDQYYCDSRLPCANQTSAVKVANISYIHIKGTSATEHAIVL ACSDYSPCTGLYLEDIQLVLNTEEISNSFCWEA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 413 Download |
| FDSLLQLPQS LSETSRPRSK RVFFVTDFGA RGDGISNDTQ AFGDAWKKAC SFPARTRIVI 60 PAGVTLLVHP VDLAGPCKSR ITLNISGTVV APKDPAYWKG LNPRKWLYFH GVNHLTIDGG 120 GTVNGMGRRW WARSCKINPE NPCRHAPTAM TFHKCKDLRV RNIRIVYGQQ MHIAFTNCIR 180 VMVFGVLVTS PAFSPNTDGI HISASRRVEV RDSIVQTGDD CISIVSNSSR IRIKNFACGP 240 GHGISIGSLG KYHSSSKVHD ILVDGAFLSN TDNGLRIKTW QGGSGEASRI KFQNVLMENV 300 SNPIIIDQYY CDSRLPCANQ TSAVKVANIS YIHIKGTSAT EHAIVLACSD YSPCTGLYLE 360 DIQLVLNTEE ISNSFCWEAY GSSVGLVTPP PCLSCNDSFI KQKVPSDSLQ FL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 1.0e-86 | 23 | 392 | 374 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 1.0e-89 | 22 | 394 | 374 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-93 | 50 | 365 | 316 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 3.0e-120 | 25 | 374 | 352 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 0 | 1 | 411 | 411 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD55489.1 | 0 | 1 | 406 | 31 | 452 | AC009322_29 Similar to polygalacturonases [Arabidopsis thaliana] |
| GenBank | ABM67700.1 | 0 | 1 | 407 | 33 | 439 | polygalacturonase [Citrus sinensis] |
| RefSeq | NP_565232.1 | 0 | 1 | 406 | 31 | 437 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002299601.1 | 0 | 1 | 412 | 30 | 447 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002517603.1 | 0 | 1 | 412 | 12 | 424 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-24 | 116 | 364 | 118 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 4e-21 | 47 | 351 | 15 | 312 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 4e-21 | 47 | 351 | 15 | 312 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 4e-21 | 47 | 351 | 15 | 312 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 4e-21 | 47 | 351 | 15 | 312 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DV145178 | 223 | 1 | 221 | 0 |
| EC954904 | 286 | 1 | 285 | 0 |
| DV145325 | 250 | 161 | 410 | 0 |
| EY660204 | 221 | 1 | 221 | 0 |
| EY660853 | 236 | 1 | 236 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
