| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_031112m |
| Family | PL4 |
| Protein Properties | Length: 639 Molecular Weight: 72545.5 Isoelectric Point: 4.6545 |
| Chromosome | Chromosome/Scaffold: 02895 Start: 569689 End: 574471 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 6 | 623 | 0 |
| VQLIIQDRHVMIDNGILQVTLSNPEGIVTGIRYNGIDNLLEVLNEESNRGYWDLVWSTQGTTGTTGIFDVIKGTSLKVIVESEEQVELSFTRSWDPSLEG KLVPLNIDKRFVMLRGSSGFYSYSIYEHLQEWPGFNLGETRIAFKLRKDKFHYMAVADNRQRYMPLPDDRLPPRGQALAYPEAVLLVNPVEPDLKGEVDD KYQYSSENKDNRVHGWICMDPPVGFWQITPSNEFRSGGPLKQNLTSHVGPTTLAMFLSAHYSGEDLVPKFQAGEAWKKVFGPVFMYVNSAMLGDDPLSLW EDAKEQMEIEVQSWPYCFPASEDFQKSDQRGNVSGRLLVKDRFLSDDYISANGAYVGLGPPGDVGSWQRECKDYQFWSKADENGYFSINDIRTGDYNLYA WVPDFIGDYRYEVVITITTGCDIDMGDLVFEPPRDGPTLWEIGIPDRSAAEFYVPDPNPSYINKLYVNHPDRFRQYGLWERYAELYPNGDLVYTIGSSDF TKDWFFAQVTRKKDDNTYQRTTWQIKFKLDSADQNGIYKLRIALASATVSELQVRINDPKANPIFSSGLIGKDNSIARHGIHGLYWLYNVDVGGTLLVQG DNTLFLTQPRSASPFQAI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 639 Download |
| MPPRGVQLII QDRHVMIDNG ILQVTLSNPE GIVTGIRYNG IDNLLEVLNE ESNRGYWDLV 60 WSTQGTTGTT GIFDVIKGTS LKVIVESEEQ VELSFTRSWD PSLEGKLVPL NIDKRFVMLR 120 GSSGFYSYSI YEHLQEWPGF NLGETRIAFK LRKDKFHYMA VADNRQRYMP LPDDRLPPRG 180 QALAYPEAVL LVNPVEPDLK GEVDDKYQYS SENKDNRVHG WICMDPPVGF WQITPSNEFR 240 SGGPLKQNLT SHVGPTTLAM FLSAHYSGED LVPKFQAGEA WKKVFGPVFM YVNSAMLGDD 300 PLSLWEDAKE QMEIEVQSWP YCFPASEDFQ KSDQRGNVSG RLLVKDRFLS DDYISANGAY 360 VGLGPPGDVG SWQRECKDYQ FWSKADENGY FSINDIRTGD YNLYAWVPDF IGDYRYEVVI 420 TITTGCDIDM GDLVFEPPRD GPTLWEIGIP DRSAAEFYVP DPNPSYINKL YVNHPDRFRQ 480 YGLWERYAEL YPNGDLVYTI GSSDFTKDWF FAQVTRKKDD NTYQRTTWQI KFKLDSADQN 540 GIYKLRIALA SATVSELQVR INDPKANPIF SSGLIGKDNS IARHGIHGLY WLYNVDVGGT 600 LLVQGDNTLF LTQPRSASPF QAILYDYLRF EAPSSSSP* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10316 | RGL4_M | 3.0e-30 | 334 | 433 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 1.0e-51 | 445 | 631 | 189 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 5.0e-81 | 11 | 304 | 297 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 3.0e-104 | 1 | 203 | 203 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI19298.1 | 0 | 1 | 635 | 1 | 646 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002285626.1 | 0 | 17 | 635 | 1 | 617 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002301112.1 | 0 | 17 | 632 | 1 | 613 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527352.1 | 0 | 1 | 634 | 1 | 632 | lyase, putative [Ricinus communis] |
| RefSeq | XP_002527353.1 | 0 | 1 | 638 | 1 | 638 | lyase, putative [Ricinus communis] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DW479599 | 294 | 1 | 294 | 0 |
| DW479600 | 294 | 1 | 294 | 0 |
| DT552229 | 293 | 17 | 308 | 0 |
| DY293973 | 351 | 1 | 348 | 0 |
| GW864372 | 311 | 147 | 457 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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