| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_031143m |
| Family | GH28 |
| Protein Properties | Length: 390 Molecular Weight: 41506.9 Isoelectric Point: 9.3301 |
| Chromosome | Chromosome/Scaffold: 11581 Start: 1067162 End: 1068651 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 48 | 376 | 0 |
| WAAACGSTGPTMIYVPKGRYLLGSMVFGGGCKSPDITIRIDGTLVAPGDYRILGKAANWLSFEGVAGVSIVGGALDAKGSALWACKAKGKNCPSGATSLS FTNSNNIKIKGLLSLNSHMFHIVINGCQNVNVEGIKVIAAGDSPNTDGIHVQLSNNIAIINSNIKTGDDCISIGPGTQNLWIERVKCGPGHGISIGSLAK ELEEEGVQNVTVTKTVFADTQNGLRIKSWARPSKGFVRRVRFIGAIMKNVQNPIVIDQNYCPHNLNCPNKMSGVKINDILYQNIRGTSATEVGIKFDCSS KNPCSDIRLHNINLTYSNQIAQSLCVNVL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 390 Download |
| MAGLFFFFFI FFVLHFSLSS ATTNFNVLSY GAKPTGLTDS TKAFLNAWAA ACGSTGPTMI 60 YVPKGRYLLG SMVFGGGCKS PDITIRIDGT LVAPGDYRIL GKAANWLSFE GVAGVSIVGG 120 ALDAKGSALW ACKAKGKNCP SGATSLSFTN SNNIKIKGLL SLNSHMFHIV INGCQNVNVE 180 GIKVIAAGDS PNTDGIHVQL SNNIAIINSN IKTGDDCISI GPGTQNLWIE RVKCGPGHGI 240 SIGSLAKELE EEGVQNVTVT KTVFADTQNG LRIKSWARPS KGFVRRVRFI GAIMKNVQNP 300 IVIDQNYCPH NLNCPNKMSG VKINDILYQN IRGTSATEVG IKFDCSSKNP CSDIRLHNIN 360 LTYSNQIAQS LCVNVLGKTI GLVKPHGCL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-78 | 52 | 375 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 6.0e-80 | 21 | 385 | 375 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-87 | 25 | 389 | 374 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 3.0e-96 | 21 | 388 | 376 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 5.0e-142 | 21 | 389 | 370 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI23356.1 | 0 | 1 | 389 | 1 | 390 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002262690.1 | 0 | 19 | 389 | 26 | 400 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002315106.1 | 0 | 1 | 389 | 8 | 397 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002524365.1 | 0 | 1 | 389 | 1 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
| RefSeq | XP_002529090.1 | 0 | 6 | 389 | 9 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 6e-19 | 89 | 375 | 117 | 374 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 2e-17 | 17 | 378 | 13 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 2iq7_G | 6e-16 | 119 | 362 | 77 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 6e-16 | 119 | 362 | 77 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 6e-16 | 119 | 362 | 77 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
