| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_031277m |
| Family | GH28 |
| Protein Properties | Length: 391 Molecular Weight: 42085.1 Isoelectric Point: 9.0666 |
| Chromosome | Chromosome/Scaffold: 11456 Start: 169117 End: 170964 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 51 | 378 | 0 |
| KSACSSATASTIYVPKGRYLIKGVEFRGPCKSRIKVQIDGTILAPLDYHAIGNSGYWILFIQVNRISVFGGTLDAKGAGFWACRRAGKNCPVGARSITFN WANDILISGLRSINSQLTHLVINSCKNVQVRNVNLMAPDLSPNTDGIHVQSSTGVSITGSTLQTGDDCISIGPGTSNLHISRIKCGPGHGVSIGSLGRQL KEDGVQNITLTDSVFIGSDNGVRIKTWARPSTSFVRNVLFQNIIMRDVENPIIIDQDYCPNNVGCPGQSSGVKISEVTYKNIQGTSATPEAVTFECSPSN PCKGIRLQDIKLTYMNKAATSSCKNIDG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 391 Download |
| MANKLLLVSF VLSFFFFFMI HSSNADHNVI RYGAKPDGKT DATQAFLRAW KSACSSATAS 60 TIYVPKGRYL IKGVEFRGPC KSRIKVQIDG TILAPLDYHA IGNSGYWILF IQVNRISVFG 120 GTLDAKGAGF WACRRAGKNC PVGARSITFN WANDILISGL RSINSQLTHL VINSCKNVQV 180 RNVNLMAPDL SPNTDGIHVQ SSTGVSITGS TLQTGDDCIS IGPGTSNLHI SRIKCGPGHG 240 VSIGSLGRQL KEDGVQNITL TDSVFIGSDN GVRIKTWARP STSFVRNVLF QNIIMRDVEN 300 PIIIDQDYCP NNVGCPGQSS GVKISEVTYK NIQGTSATPE AVTFECSPSN PCKGIRLQDI 360 KLTYMNKAAT SSCKNIDGTS TGLLTPESCF * 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-91 | 54 | 376 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 7.0e-96 | 28 | 387 | 367 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 3.0e-102 | 29 | 390 | 371 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 2.0e-111 | 20 | 389 | 378 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 1.0e-174 | 28 | 390 | 365 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002309713.1 | 0 | 7 | 389 | 1 | 389 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002331634.1 | 0 | 6 | 390 | 4 | 390 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002529096.1 | 0 | 1 | 390 | 1 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
| RefSeq | XP_002529097.1 | 0 | 1 | 390 | 1 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
| RefSeq | XP_002529098.1 | 0 | 1 | 390 | 1 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 7e-22 | 40 | 376 | 6 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 7e-22 | 40 | 376 | 6 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 7e-22 | 40 | 376 | 6 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 7e-22 | 40 | 376 | 6 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 7e-22 | 40 | 376 | 6 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
