| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_031312m |
| Family | GH28 |
| Protein Properties | Length: 475 Molecular Weight: 51374.9 Isoelectric Point: 7.1881 |
| Chromosome | Chromosome/Scaffold: 10305 Start: 621577 End: 623632 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 105 | 433 | 0 |
| DAACQTEFSVLLAPVGYSFMILPTIFTGPCKNGLVFQIDGTILPPDGPESWPTKTSKRQWLVFYRINEMSMQGGGVIDGKGEKWWNLPCKPHKGTHGTSL GPCDSPVAIRFFMSSNLRVQGLRVKNSPQFHFRFDNCQNVHVEMLSIIAPASSPNTDGIHIESTNNVQIYNSIVSNGDDCISIGAGCYNVKIRNITCGPS HGISIGSLGVHNTRACVSNITVTDSVIKNSDNGVRIKTWQGGYGCVSKVTFNNIHMDTVRNPIIIDQFYCLSKNCTNQTTAVYISDISYTNIKGTYDVRS PPLHLACSDSVPCSNLILSDIELLPAKGQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 475 Download |
| MALSLIFLLV FALSLCSFFT SIEGRFHGLT KQKYLHIVSK ISLPPSPVPA LAPVPAPAPQ 60 AASPSYIASS PSPEPSSVRV FDVLSFGAVG DGASDDTQAF KMAWDAACQT EFSVLLAPVG 120 YSFMILPTIF TGPCKNGLVF QIDGTILPPD GPESWPTKTS KRQWLVFYRI NEMSMQGGGV 180 IDGKGEKWWN LPCKPHKGTH GTSLGPCDSP VAIRFFMSSN LRVQGLRVKN SPQFHFRFDN 240 CQNVHVEMLS IIAPASSPNT DGIHIESTNN VQIYNSIVSN GDDCISIGAG CYNVKIRNIT 300 CGPSHGISIG SLGVHNTRAC VSNITVTDSV IKNSDNGVRI KTWQGGYGCV SKVTFNNIHM 360 DTVRNPIIID QFYCLSKNCT NQTTAVYISD ISYTNIKGTY DVRSPPLHLA CSDSVPCSNL 420 ILSDIELLPA KGQFMADPFC WNAFGATQTV TIPPVLCLSE GIPRFVDQTM VDQC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 8.0e-82 | 81 | 454 | 389 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 3.0e-85 | 81 | 473 | 401 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-91 | 113 | 427 | 316 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 8.0e-101 | 83 | 427 | 353 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 9.0e-127 | 79 | 459 | 384 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002276945.1 | 0 | 1 | 474 | 1 | 464 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002318932.1 | 0 | 1 | 473 | 1 | 471 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002320271.1 | 0 | 76 | 474 | 38 | 438 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002330008.1 | 0 | 79 | 465 | 20 | 408 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002512560.1 | 0 | 1 | 474 | 1 | 470 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 1e-28 | 143 | 431 | 41 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 1e-28 | 143 | 431 | 41 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 1e-28 | 143 | 431 | 41 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 1e-28 | 143 | 431 | 41 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 1e-28 | 143 | 431 | 41 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
