| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_031445m |
| Family | GH28 |
| Protein Properties | Length: 475 Molecular Weight: 51377.3 Isoelectric Point: 4.8389 |
| Chromosome | Chromosome/Scaffold: 03823 Start: 109972 End: 112778 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 87 | 417 | 0 |
| QMACATPKSVLLVPPGRRYLVNATKFKGPCEDRLVIQIDGTIVAPDEPMNWDPKLPRLWLDFSRLNGVLFQGNGVIDGSGSKWWESSCKKNKSNPCRGAP TAVTIDSSSSVKVRGLTIQNSQQMHFVISRCASVRVSEVLVSAPEDSPNTDGIHITESTNVVLQDCKIGTGDDCISIVNGSSGIKMKRIYCGPGHGVSIG SLGKDNSTGIVTKVVLDTAFLKEATNGLRIKTWQGGNGYVRGIRFENVRMEDVANPIIIDQFYCDSPKACQNQTSAVKISEIMYRNITGTTKSAKAMKFA CSDTVPCSNIVLSNINLEKKDGTVETYCNAA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 475 Download |
| MDKIFIIFFL GLLSVVYTVA GNMVYNNIGM LEELEGFEID EESEVELFYT PSWTSERGSK 60 VLVNVDSFGA IGDGISDDTQ AFVKAWQMAC ATPKSVLLVP PGRRYLVNAT KFKGPCEDRL 120 VIQIDGTIVA PDEPMNWDPK LPRLWLDFSR LNGVLFQGNG VIDGSGSKWW ESSCKKNKSN 180 PCRGAPTAVT IDSSSSVKVR GLTIQNSQQM HFVISRCASV RVSEVLVSAP EDSPNTDGIH 240 ITESTNVVLQ DCKIGTGDDC ISIVNGSSGI KMKRIYCGPG HGVSIGSLGK DNSTGIVTKV 300 VLDTAFLKEA TNGLRIKTWQ GGNGYVRGIR FENVRMEDVA NPIIIDQFYC DSPKACQNQT 360 SAVKISEIMY RNITGTTKSA KAMKFACSDT VPCSNIVLSN INLEKKDGTV ETYCNAAQGF 420 GYGIIHPSAD CLTSQDKGYF GVGLTSIAED NVTDRTDIAE LAESSGDAIV HTEL* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 4.0e-90 | 59 | 408 | 359 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 1.0e-95 | 63 | 404 | 346 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-99 | 90 | 404 | 315 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 7.0e-116 | 63 | 415 | 367 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-146 | 59 | 434 | 378 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI28554.1 | 0 | 17 | 474 | 666 | 1111 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002299032.1 | 0 | 19 | 474 | 19 | 469 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002317091.1 | 0 | 30 | 474 | 1 | 447 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002328587.1 | 0 | 1 | 439 | 1 | 440 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002525360.1 | 0 | 1 | 474 | 1 | 510 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 5e-21 | 158 | 378 | 115 | 338 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 8e-19 | 162 | 403 | 80 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 8e-19 | 162 | 403 | 80 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 8e-19 | 162 | 403 | 80 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 8e-19 | 162 | 403 | 80 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
