| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_031726m |
| Family | GH28 |
| Protein Properties | Length: 385 Molecular Weight: 40542.9 Isoelectric Point: 8.7063 |
| Chromosome | Chromosome/Scaffold: 10126 Start: 54721 End: 56125 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 52 | 382 | 0 |
| WTQACASTKSATIYVPKGRFLLSRVAFQGPCKNNATFLRIDGSLVAPSDYRVIGSSQNWIIFEHVNGVKVSGGVIDGRGTGLWSCKNSGKTCPDGATSLE FTNSNNIVISRLTSLNSQKFHIVINECQNVKVQGMKIIASGESPNTDGIHVQASTGVTILNSKIGTGDDCVSIGPGTTNMGIQNVACGPGHGISIGSLGK DVQENGVQNVTVTGATFTGTENGVRIKTWGRPSNGFARNIVFQHLVMNNVQNPMVIDQNYCPSHSDCPGQVSGVKISDVSYLDIHGSSASEIAVKFDCSK KYPCSGIKLLGINLTYKNQPVQASCNNTNGA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 385 Download |
| MAHAANPSFH VLLLFISLAS SLSMGAVQYN VRSYGAKPDG KTDSTKAFLA AWTQACASTK 60 SATIYVPKGR FLLSRVAFQG PCKNNATFLR IDGSLVAPSD YRVIGSSQNW IIFEHVNGVK 120 VSGGVIDGRG TGLWSCKNSG KTCPDGATSL EFTNSNNIVI SRLTSLNSQK FHIVINECQN 180 VKVQGMKIIA SGESPNTDGI HVQASTGVTI LNSKIGTGDD CVSIGPGTTN MGIQNVACGP 240 GHGISIGSLG KDVQENGVQN VTVTGATFTG TENGVRIKTW GRPSNGFARN IVFQHLVMNN 300 VQNPMVIDQN YCPSHSDCPG QVSGVKISDV SYLDIHGSSA SEIAVKFDCS KKYPCSGIKL 360 LGINLTYKNQ PVQASCNNTN GACL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-87 | 56 | 383 | 337 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 5.0e-96 | 31 | 365 | 342 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 1.0e-96 | 30 | 380 | 361 | + polygalacturonase ADPG | ||
| PLN02188 | PLN02188 | 7.0e-111 | 29 | 378 | 356 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 3.0e-138 | 29 | 384 | 357 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002309716.1 | 0 | 4 | 381 | 2 | 379 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002310385.1 | 0 | 6 | 381 | 9 | 385 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002331621.1 | 0 | 10 | 381 | 13 | 384 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002529090.1 | 0 | 1 | 381 | 1 | 381 | Polygalacturonase precursor, putative [Ricinus communis] |
| RefSeq | XP_002529091.1 | 0 | 1 | 381 | 1 | 380 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-18 | 150 | 352 | 154 | 350 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1hg8_A | 3e-16 | 122 | 383 | 77 | 347 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 2iq7_G | 5e-16 | 55 | 375 | 17 | 329 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 5e-16 | 55 | 375 | 17 | 329 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 5e-16 | 55 | 375 | 17 | 329 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
