| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_031743m |
| Family | GH28 |
| Protein Properties | Length: 383 Molecular Weight: 40181.5 Isoelectric Point: 9.0259 |
| Chromosome | Chromosome/Scaffold: 10126 Start: 49121 End: 51057 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 53 | 381 | 0 |
| WTQACASTKSVTIYAPKGRFLLSKLAFQGPCKNNATVLRIDGSLVAPSDYSVIGSSQNWISFEHVNGVKVSGGILDGQGTGLWSCKASGKSCPDGATSLG FANSKNIVISGLTSLNSQKIHILIDSCQNVKVQGVKIMASGKSPNTDGIHVQASTSVTILNSKIGTGDDCVSISPGTSNMWVQNVACGPGHGISIGSLGK SLQEGGVQNVTVTQTIFTGTSNGVRIKTWGRPSNGFAKNIIFEHLIMNNVQNPIVIDQNYCPGHNNCPSQDSGVKISNVTYLDIHGSSGTKIAVKFDCSK KYPCNGIELKDINLTYKNQPAEASCNNSS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 383 Download |
| MAHAVNPSFH VVLILFISLA SSFATGAVQY NVRSYGAKPD GKTDSTKAFL AAWTQACAST 60 KSVTIYAPKG RFLLSKLAFQ GPCKNNATVL RIDGSLVAPS DYSVIGSSQN WISFEHVNGV 120 KVSGGILDGQ GTGLWSCKAS GKSCPDGATS LGFANSKNIV ISGLTSLNSQ KIHILIDSCQ 180 NVKVQGVKIM ASGKSPNTDG IHVQASTSVT ILNSKIGTGD DCVSISPGTS NMWVQNVACG 240 PGHGISIGSL GKSLQEGGVQ NVTVTQTIFT GTSNGVRIKT WGRPSNGFAK NIIFEHLIMN 300 NVQNPIVIDQ NYCPGHNNCP SQDSGVKISN VTYLDIHGSS GTKIAVKFDC SKKYPCNGIE 360 LKDINLTYKN QPAEASCNNS SGA 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-89 | 57 | 379 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 7.0e-92 | 32 | 366 | 342 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 6.0e-93 | 31 | 381 | 358 | + polygalacturonase ADPG | ||
| PLN02188 | PLN02188 | 2.0e-108 | 30 | 379 | 357 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 9.0e-135 | 13 | 382 | 371 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002309716.1 | 0 | 13 | 382 | 10 | 379 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002310385.1 | 0 | 1 | 382 | 1 | 385 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002529090.1 | 0 | 1 | 382 | 1 | 381 | Polygalacturonase precursor, putative [Ricinus communis] |
| RefSeq | XP_002529091.1 | 0 | 1 | 382 | 1 | 380 | Polygalacturonase precursor, putative [Ricinus communis] |
| RefSeq | XP_002529092.1 | 0 | 1 | 382 | 1 | 382 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-17 | 156 | 367 | 159 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 0.0000000000002 | 31 | 374 | 22 | 346 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 2iq7_G | 0.0000000000003 | 112 | 346 | 63 | 302 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 0.0000000000003 | 112 | 346 | 63 | 302 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 0.0000000000003 | 112 | 346 | 63 | 302 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
