y
Basic Information | |
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Species | Manihot esculenta |
Cazyme ID | cassava4.1_031845m |
Family | GH28 |
Protein Properties | Length: 502 Molecular Weight: 54910.9 Isoelectric Point: 5.3492 |
Chromosome | Chromosome/Scaffold: 00080 Start: 181291 End: 183250 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 132 | 458 | 0 |
TACQVDSAVILVPYGFTFMIQSTIFTGPCQCGLQFQVDGTLSPPDGPDSWPQKNSKRQWLVFYRVNEMSLVGGGVIDGRGEKWWDLPCKPHKGINGTTLP GPCDSPIAIRFFMSSNLTVQGLRIKNSPQFNFRFDNCKTVHIKSIHITAPALSPNTDGIHIENTNDVEIYDSVISNGDDCISIGSGCYDVDIRNVTCGPS HGISIGSLGNHNSRACVSNITVRDSVIRVSDNGVRIKTWQGGSGAVSGITFSNIHMDNVRNPIIIDQFYCSTKDCANKTSAVFVSDILYENIKGTYNIRS PPMHFGCSDSVPCTNLTFSDVELLPAQ |
Full Sequence |
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Protein Sequence Length: 502 Download |
MGCSRLPLLV FCIFCLCFFL YTAQARWHHH HTKHKHTHSQ KPSGISQPPY SSPEYAHLSE 60 PPSTPPEFSY LPEPPTLPPE SANLTPTPSP EPASSPDDGS DYNSGVFDVR KFGAVGDGIT 120 DDTDAFKMAW ETACQVDSAV ILVPYGFTFM IQSTIFTGPC QCGLQFQVDG TLSPPDGPDS 180 WPQKNSKRQW LVFYRVNEMS LVGGGVIDGR GEKWWDLPCK PHKGINGTTL PGPCDSPIAI 240 RFFMSSNLTV QGLRIKNSPQ FNFRFDNCKT VHIKSIHITA PALSPNTDGI HIENTNDVEI 300 YDSVISNGDD CISIGSGCYD VDIRNVTCGP SHGISIGSLG NHNSRACVSN ITVRDSVIRV 360 SDNGVRIKTW QGGSGAVSGI TFSNIHMDNV RNPIIIDQFY CSTKDCANKT SAVFVSDILY 420 ENIKGTYNIR SPPMHFGCSD SVPCTNLTFS DVELLPAQGD IVQDPFCWNA YGELQTLTIP 480 PVSCLMEGAP RSMLDNEMDY C* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 4.0e-84 | 104 | 485 | 390 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 3.0e-84 | 103 | 481 | 388 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 1.0e-92 | 139 | 454 | 316 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 8.0e-105 | 109 | 454 | 350 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 5.0e-123 | 106 | 481 | 379 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37004.1 | 0 | 78 | 501 | 59 | 484 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002272733.1 | 0 | 78 | 501 | 40 | 456 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002302793.1 | 0 | 1 | 501 | 1 | 457 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002320271.1 | 0 | 99 | 501 | 35 | 438 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515219.1 | 0 | 1 | 501 | 1 | 537 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 3e-26 | 164 | 454 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-26 | 164 | 454 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-26 | 164 | 454 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 3e-26 | 164 | 454 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 3e-26 | 164 | 454 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |