| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_032219m |
| Family | GH28 |
| Protein Properties | Length: 480 Molecular Weight: 52462.1 Isoelectric Point: 7.7295 |
| Chromosome | Chromosome/Scaffold: 06948 Start: 750776 End: 753743 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 109 | 442 | 0 |
| DKGGSQLNVPKGRWLTGSFNLTSNFTLFLEEGAVILGSQDPKEWPIIEPLPSYGRGRERLGGRHISLIHGNGLSNVVITGDNGTIDGQGKMWWELWWNRT LVHTRGHLVELMNSHNILISNLTFRNSPFWTIHPVYCSNVVVKDMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDQYGIKMAHPSSN ILVKRVAGTTPTCSGVGIGSEMSGGIFNVTIEDLHVWDSAAGVRIKTDKGRGGYISNITISNITMERVKIPIRFSRGSNDHPDEGWDRNAIPVVKGVSIS NIVSLNSTKAPVLQGIKDAPFGGICMKNVTLIGL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 480 Download |
| MDCGKQNHGS AIMGKVTRLS WSPLLLLITL ILILSFQITT RTIYPIRLMS GLSEPEVSEV 60 VGSCVGFLRE FPRREVIMSI KDFGGVGDGK TSNTDTFRRA ILYMQRFGDK GGSQLNVPKG 120 RWLTGSFNLT SNFTLFLEEG AVILGSQDPK EWPIIEPLPS YGRGRERLGG RHISLIHGNG 180 LSNVVITGDN GTIDGQGKMW WELWWNRTLV HTRGHLVELM NSHNILISNL TFRNSPFWTI 240 HPVYCSNVVV KDMTILAPLN APNTDGIDPD SSTNVCIEDC YIESGDDLVA VKSGWDQYGI 300 KMAHPSSNIL VKRVAGTTPT CSGVGIGSEM SGGIFNVTIE DLHVWDSAAG VRIKTDKGRG 360 GYISNITISN ITMERVKIPI RFSRGSNDHP DEGWDRNAIP VVKGVSISNI VSLNSTKAPV 420 LQGIKDAPFG GICMKNVTLI GLASASWHCE FISGFAKDVF PMPCPQLQNN ASTSWCSYS* 480 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 6.0e-22 | 72 | 380 | 322 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 4.0e-26 | 78 | 417 | 355 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 2.0e-29 | 61 | 441 | 401 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-33 | 176 | 452 | 286 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 2.0e-61 | 42 | 406 | 397 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI37530.1 | 0 | 1 | 476 | 1 | 476 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002274138.1 | 0 | 1 | 476 | 1 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002307030.1 | 0 | 78 | 468 | 1 | 392 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002310517.1 | 0 | 63 | 479 | 20 | 437 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002526639.1 | 0 | 10 | 479 | 5 | 480 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 6.02558e-44 | 70 | 451 | 22 | 421 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 6.02558e-44 | 70 | 451 | 22 | 421 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 6.02558e-44 | 70 | 451 | 22 | 421 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 6.02558e-44 | 70 | 451 | 22 | 421 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 8e-23 | 122 | 380 | 52 | 308 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
