y
Basic Information | |
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Species | Manihot esculenta |
Cazyme ID | cassava4.1_032287m |
Family | GT4 |
Protein Properties | Length: 206 Molecular Weight: 23091 Isoelectric Point: 6.242 |
Chromosome | Chromosome/Scaffold: 08316 Start: 179954 End: 182258 |
Description | UDP-Glycosyltransferase superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT4 | 1 | 107 | 7.8e-26 |
VRFVVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHARVQSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGGVPEVLPDDMIVLAEPDPGDMV LAIRKAI |
Full Sequence |
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Protein Sequence Length: 206 Download |
VRFVVGGDGP KRVRLEEMRE KHSLQDRVEM LGAVPHARVQ SVLISGHIFL NSSLTEAFCI 60 AILEAASCGL LTVSTRVGGV PEVLPDDMIV LAEPDPGDMV LAIRKAISLL PKIDPQVMHE 120 RMKKLYTWHD VAKRTEIVYN RALKCPNQNL LERLSRYLSC GAWAGKLFCL VMIIDVLLLR 180 LVQLWQPEED IEEVPEFTVS NNHQD* 240 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00534 | Glycos_transf_1 | 3.0e-19 | 1 | 112 | 114 | + Glycosyl transferases group 1. Mutations in this domain of human PIGA lead to disease (Paroxysmal Nocturnal haemoglobinuria). Members of this family transfer activated sugars to a variety of substrates, including glycogen, Fructose-6-phosphate and lipopolysaccharides. Members of this family transfer UDP, ADP, GDP or CMP linked sugars. The eukaryotic glycogen synthases may be distant members of this family. | ||
COG0438 | RfaG | 2.0e-22 | 1 | 144 | 149 | + Glycosyltransferase [Cell envelope biogenesis, outer membrane] | ||
cd03798 | GT1_wlbH_like | 5.0e-27 | 1 | 142 | 144 | + This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS. | ||
cd03801 | GT1_YqgM_like | 1.0e-27 | 1 | 140 | 149 | + This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea. | ||
cd03796 | GT1_PIG-A_like | 4.0e-99 | 1 | 172 | 174 | + This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder. |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN33834.1 | 0 | 1 | 203 | 173 | 375 | unknown [Zea mays] |
RefSeq | NP_566874.1 | 0 | 1 | 202 | 232 | 433 | SETH2; transferase, transferring glycosyl groups [Arabidopsis thaliana] |
RefSeq | XP_002279568.1 | 0 | 1 | 202 | 232 | 433 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002461824.1 | 0 | 1 | 203 | 233 | 435 | hypothetical protein SORBIDRAFT_02g008800 [Sorghum bicolor] |
RefSeq | XP_002529442.1 | 0 | 1 | 205 | 231 | 434 | glycosyltransferase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jjm_L | 0.0000004 | 7 | 110 | 248 | 348 | A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. |
PDB | 2jjm_K | 0.0000004 | 7 | 110 | 248 | 348 | A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. |
PDB | 2jjm_J | 0.0000004 | 7 | 110 | 248 | 348 | A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. |
PDB | 2jjm_I | 0.0000004 | 7 | 110 | 248 | 348 | A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. |
PDB | 2jjm_H | 0.0000004 | 7 | 110 | 248 | 348 | A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EE654938 | 197 | 1 | 197 | 0 |
FG994863 | 199 | 1 | 199 | 0 |
CA259305 | 203 | 1 | 203 | 0 |
CJ552911 | 205 | 1 | 205 | 0 |
GO854391 | 205 | 1 | 205 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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