| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_032307m |
| Family | GH28 |
| Protein Properties | Length: 392 Molecular Weight: 42724.1 Isoelectric Point: 8.4504 |
| Chromosome | Chromosome/Scaffold: 04151 Start: 272501 End: 276306 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 47 | 378 | 0 |
| WGAVCRATHETLLIVPPRKTFLLKPVKFLGPCKSPGIQILVEGNIVAPSKISEWTTTYMGSWIVFVRVNGVKVTGNGEIHGKGFEWWRCAVKSKCMRPMG MKFHSCNNIEISGLKIFNTPEKFLSVSDSNHVIISNLQIKNPKTSPNTDGMDLTHSTNVYVRDSHISTGDDCIAILSGCSRIFISGISCIQGHGISIGSM GHNGQYDTVEEVHVRNCKFGSSLNGAHIKTWQGGSGFVRKVTFQDITLHNTSNPINIDQFYCPGGKCPNQTRAVQLSDISFIGFRGTSFTETAINIACSQ SLGCSNIFLDHINIISSDPHKKVHSNCFNARG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 392 Download |
| MDLYTIFLML CMATLGSSMG PHLFNVVDFG AVGDGITDDS KAFMKAWGAV CRATHETLLI 60 VPPRKTFLLK PVKFLGPCKS PGIQILVEGN IVAPSKISEW TTTYMGSWIV FVRVNGVKVT 120 GNGEIHGKGF EWWRCAVKSK CMRPMGMKFH SCNNIEISGL KIFNTPEKFL SVSDSNHVII 180 SNLQIKNPKT SPNTDGMDLT HSTNVYVRDS HISTGDDCIA ILSGCSRIFI SGISCIQGHG 240 ISIGSMGHNG QYDTVEEVHV RNCKFGSSLN GAHIKTWQGG SGFVRKVTFQ DITLHNTSNP 300 INIDQFYCPG GKCPNQTRAV QLSDISFIGF RGTSFTETAI NIACSQSLGC SNIFLDHINI 360 ISSDPHKKVH SNCFNARGRS TNTFPAVNCL Q* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 9.0e-80 | 20 | 379 | 367 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-81 | 52 | 365 | 317 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 4.0e-97 | 23 | 390 | 374 | + Probable polygalacturonase | ||
| PLN03010 | PLN03010 | 1.0e-101 | 24 | 383 | 362 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 2.0e-112 | 5 | 391 | 393 | + Probable polygalacturonase At3g15720 | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI36306.1 | 0 | 6 | 390 | 101 | 493 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI36306.1 | 0.00000002 | 319 | 387 | 23 | 90 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI36307.1 | 0 | 1 | 391 | 2 | 403 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002266797.1 | 0 | 24 | 390 | 18 | 372 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002324855.1 | 0 | 1 | 390 | 2 | 394 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 7e-23 | 39 | 352 | 7 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 7e-23 | 39 | 352 | 7 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 7e-23 | 39 | 352 | 7 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 7e-23 | 39 | 352 | 7 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 7e-23 | 39 | 352 | 7 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
