| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_032317m |
| Family | GH28 |
| Protein Properties | Length: 175 Molecular Weight: 18334.2 Isoelectric Point: 8.7242 |
| Chromosome | Chromosome/Scaffold: 11399 Start: 54602 End: 55972 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 15 | 163 | 6.7e-38 |
| SNIATGDDCITIGGASEQIRITNVRCGHGHGNSVGSLGKTTDEFTWPALHGGMASNMHLEDIMMKNVCNPIIIDQVYCPGNQCNPKLPSKVKIANVTFKN IRGSSATTVAIRLNCSSSFACQKVELTNINLTYRAKEGPAKSLCANVKP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 175 Download |
| GGIEIGLVSG IKGCSNIATG DDCITIGGAS EQIRITNVRC GHGHGNSVGS LGKTTDEFTW 60 PALHGGMASN MHLEDIMMKN VCNPIIIDQV YCPGNQCNPK LPSKVKIANV TFKNIRGSSA 120 TTVAIRLNCS SSFACQKVEL TNINLTYRAK EGPAKSLCAN VKPTLKGKLT PTIC* 180 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 2.0e-28 | 15 | 171 | 178 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-33 | 2 | 174 | 198 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 7.0e-34 | 15 | 174 | 182 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-42 | 1 | 162 | 185 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 1.0e-45 | 2 | 174 | 197 | + polygalacturonase/glycoside hydrolase family protein | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAA89476.1 | 0 | 2 | 174 | 198 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89477.1 | 0 | 2 | 174 | 198 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89478.1 | 0 | 2 | 174 | 198 | 393 | polygalacturonase [Salix gilgiana] |
| RefSeq | XP_002282573.1 | 0 | 2 | 174 | 199 | 394 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002329175.1 | 0 | 2 | 174 | 198 | 393 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.000002 | 15 | 146 | 217 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 0.0002 | 21 | 145 | 197 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DC244603 | 186 | 11 | 174 | 0 |
| FG193077 | 180 | 17 | 174 | 0 |
| EC935564 | 196 | 2 | 174 | 0 |
| EC947475 | 196 | 2 | 174 | 0 |
| EC939231 | 196 | 2 | 174 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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