| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_032576m |
| Family | GH28 |
| Protein Properties | Length: 241 Molecular Weight: 25841.8 Isoelectric Point: 10.1685 |
| Chromosome | Chromosome/Scaffold: 11456 Start: 116446 End: 119691 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 49 | 241 | 0 |
| AWSAACMSTGPATVYVPRGSFLVKPIVFSGPCKNKILFRIDGKILGPSNYWSYGSSGFWILFYKVSRVNIHGGIVDARGRSYWACRNAGKICPPGARSIS LVASRNVIVSRLISMNSQMFHIAIDQCRNIVLENLTISAPSLSPNTDGVHIQSSTGINISNSTIKTGDDCISMGPGSKNILIQRIACGPGHGI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 241 Download |
| MAKNNIVHCL LILVLFSSSS RASNGAYNVE SFGAKPDGRT DSTQAFVRAW SAACMSTGPA 60 TVYVPRGSFL VKPIVFSGPC KNKILFRIDG KILGPSNYWS YGSSGFWILF YKVSRVNIHG 120 GIVDARGRSY WACRNAGKIC PPGARSISLV ASRNVIVSRL ISMNSQMFHI AIDQCRNIVL 180 ENLTISAPSL SPNTDGVHIQ SSTGINISNS TIKTGDDCIS MGPGSKNILI QRIACGPGHG 240 I 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 2.0e-43 | 27 | 241 | 221 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 1.0e-46 | 29 | 241 | 220 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 5.0e-50 | 13 | 241 | 236 | + polygalacturonase ADPG | ||
| PLN02188 | PLN02188 | 1.0e-51 | 6 | 241 | 244 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 4.0e-81 | 1 | 241 | 243 | + polygalacturonase | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_181917.1 | 0 | 1 | 241 | 1 | 243 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002331632.1 | 0 | 1 | 241 | 1 | 240 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002331634.1 | 0 | 1 | 241 | 1 | 241 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002529094.1 | 0 | 6 | 241 | 5 | 240 | Polygalacturonase precursor, putative [Ricinus communis] |
| RefSeq | XP_002529095.1 | 0 | 6 | 241 | 5 | 240 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1rmg_A | 0.000000003 | 15 | 235 | 9 | 216 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1bhe_A | 0.000003 | 110 | 241 | 113 | 253 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 0.000004 | 119 | 241 | 76 | 199 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.000004 | 119 | 241 | 76 | 199 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.000004 | 119 | 241 | 76 | 199 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
