| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_032966m |
| Family | GH28 |
| Protein Properties | Length: 412 Molecular Weight: 44438.4 Isoelectric Point: 8.6526 |
| Chromosome | Chromosome/Scaffold: 01945 Start: 433667 End: 435333 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 73 | 400 | 0 |
| WNAACNWKGKARLLVPNGVFVASSMVFVGPCNNTAPIVFQLVGTLKALSDLTCYSEDFWMIFQNINGLVISGNGIVDGQGPNVWKYNDHSGSVFPASIKL YHVTDGIIRQINSVNPMGFHIGIVLSQNIKAIDLHLTAPEDSPNTDGIHISQSSQVVIDRSVIATGDDCVGMIQGSTDITIKKVICGPGHGISIGSLGKY PDEKDVKGILVTNCTMKKTENGIRIKTWGVSPPSKATALTFRDLIMHEVRNPIIIDQSYGSKSKGPSKVQISDVKYMNVRGTTTSEVGVDIECSKQFPCQ RVQLANINLKYTGAKKNPLSSVCENAEV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 412 Download |
| METAITKKLL ANAILLLCLA MASCEAKGLR GGMIKPSRLP GREDPTVKIF NILHFGAKTD 60 PKEDNALHLI RAWNAACNWK GKARLLVPNG VFVASSMVFV GPCNNTAPIV FQLVGTLKAL 120 SDLTCYSEDF WMIFQNINGL VISGNGIVDG QGPNVWKYND HSGSVFPASI KLYHVTDGII 180 RQINSVNPMG FHIGIVLSQN IKAIDLHLTA PEDSPNTDGI HISQSSQVVI DRSVIATGDD 240 CVGMIQGSTD ITIKKVICGP GHGISIGSLG KYPDEKDVKG ILVTNCTMKK TENGIRIKTW 300 GVSPPSKATA LTFRDLIMHE VRNPIIIDQS YGSKSKGPSK VQISDVKYMN VRGTTTSEVG 360 VDIECSKQFP CQRVQLANIN LKYTGAKKNP LSSVCENAEV SYSGIQFPPP C* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 3.0e-70 | 49 | 411 | 370 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 8.0e-73 | 32 | 408 | 389 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-77 | 85 | 403 | 325 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 5.0e-77 | 36 | 411 | 394 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 6.0e-123 | 49 | 411 | 373 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002314372.1 | 0 | 23 | 411 | 17 | 409 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002314373.1 | 0 | 69 | 386 | 3 | 320 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002315493.1 | 0 | 53 | 411 | 17 | 374 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002334010.1 | 0 | 23 | 411 | 17 | 407 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002516967.1 | 0 | 1 | 411 | 1 | 411 | Exopolygalacturonase clone GBGE184 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 0.00000000000004 | 147 | 354 | 79 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.00000000000004 | 147 | 354 | 79 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.00000000000004 | 147 | 354 | 79 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.00000000000004 | 147 | 354 | 79 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 0.00000000000004 | 147 | 354 | 79 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
