| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_033025m |
| Family | PL1 |
| Protein Properties | Length: 297 Molecular Weight: 33012.6 Isoelectric Point: 6.111 |
| Chromosome | Chromosome/Scaffold: 03332 Start: 540150 End: 541666 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 38 | 228 | 0 |
| IIFDHDMVMKLKAELIMNSHKTIDGRGYNIQIAGGACIAIQYVSNIIIHNIYIRDCIPDGNTMVRDSPKHVGIRGYSDGDGISIFGARDGWIDHCTLSNC RDGLIDAVAGSTSITISNSYMLHHNEVMLMGHGDDYLDDKNMQVTIAFNFFGEGLTQRMPRCRHGYFHIVNNIYTGWEMYAIGGSANPTIN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 297 Download |
| GRRDSEFYVV TDSENDDPVN PIPRTLRYGV IQEELLWIIF DHDMVMKLKA ELIMNSHKTI 60 DGRGYNIQIA GGACIAIQYV SNIIIHNIYI RDCIPDGNTM VRDSPKHVGI RGYSDGDGIS 120 IFGARDGWID HCTLSNCRDG LIDAVAGSTS ITISNSYMLH HNEVMLMGHG DDYLDDKNMQ 180 VTIAFNFFGE GLTQRMPRCR HGYFHIVNNI YTGWEMYAIG GSANPTINNG DVMLNGAFFT 240 PSGETGPGSY MKASSMVARP ASFLTNMSPP GALYCQRHIM LATSRLNIYP LFFFLL* 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 6.0e-21 | 80 | 220 | 159 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 5.0e-56 | 49 | 228 | 202 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 1.0e-60 | 43 | 227 | 196 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK66161.1 | 0 | 1 | 277 | 52 | 364 | pectate lyase [Fragaria x ananassa] |
| EMBL | CBI39737.1 | 0 | 1 | 276 | 15 | 327 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002265729.1 | 0 | 1 | 276 | 85 | 397 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002317359.1 | 0 | 1 | 277 | 50 | 364 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002522747.1 | 0 | 1 | 277 | 81 | 395 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 1 | 245 | 34 | 274 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 1 | 245 | 34 | 274 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 0.000000000000004 | 38 | 225 | 50 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pe9_B | 0.0000000000001 | 46 | 213 | 77 | 259 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pe9_A | 0.0000000000001 | 46 | 213 | 77 | 259 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| ES827871 | 310 | 4 | 277 | 0 |
| JG467017 | 228 | 1 | 228 | 0 |
| DW062360 | 293 | 4 | 262 | 0 |
| JK791390 | 229 | 1 | 229 | 0 |
| JK791809 | 229 | 1 | 229 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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