| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_033273m |
| Family | GH28 |
| Protein Properties | Length: 453 Molecular Weight: 49369.9 Isoelectric Point: 5.2771 |
| Chromosome | Chromosome/Scaffold: 00341 Start: 382474 End: 384942 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 64 | 414 | 0 |
| ASDGGAELIVTSGRWLTGSFNLTSHFTLFIHRSAVILASQNESDWPLLAPLPSYGVDQNLTEGRFSSLLFGMNLTDVVITGNNGTIDGQGAPWWDKFKKG QFKATRPFLIELMYTDQLQISNITLANSPFWHVHPVYSSNVVIQMVTILAPVEVPNTDGINPDSCTNVLIEDVYIVSGDDCIAIKSGWDQYGIKVGLPTE HLVIRRLTCKSPDSAAIALGSEMSGGIQDVRAEDITAFDTQSAVRIKTAPGRGGYIKDIFVKGMTLKNMQYVFWVSGAYKTHPDDGYDPKALAEFKNINY RDVFAENVTIAGSLEGYANHPFTGFCMSNVSMTLNEEAKESSPWTCTDIKG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 453 Download |
| GSFGIRIGES KNVQVLKPNS KLEYSALNCR KHSGFLTDYG GVGDGKTLNT KAFQSAIANL 60 SQYASDGGAE LIVTSGRWLT GSFNLTSHFT LFIHRSAVIL ASQNESDWPL LAPLPSYGVD 120 QNLTEGRFSS LLFGMNLTDV VITGNNGTID GQGAPWWDKF KKGQFKATRP FLIELMYTDQ 180 LQISNITLAN SPFWHVHPVY SSNVVIQMVT ILAPVEVPNT DGINPDSCTN VLIEDVYIVS 240 GDDCIAIKSG WDQYGIKVGL PTEHLVIRRL TCKSPDSAAI ALGSEMSGGI QDVRAEDITA 300 FDTQSAVRIK TAPGRGGYIK DIFVKGMTLK NMQYVFWVSG AYKTHPDDGY DPKALAEFKN 360 INYRDVFAEN VTIAGSLEGY ANHPFTGFCM SNVSMTLNEE AKESSPWTCT DIKGVSKNVI 420 PKPCDLLTGK ETDCSFPEDK LSIETIEMKS SS* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 3.0e-19 | 30 | 424 | 410 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 9.0e-24 | 36 | 425 | 409 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 1.0e-24 | 36 | 421 | 399 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-30 | 134 | 413 | 286 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 1.0e-53 | 36 | 331 | 319 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABD32865.1 | 0 | 22 | 450 | 29 | 459 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| GenBank | ACU17976.1 | 0 | 1 | 452 | 23 | 470 | unknown [Glycine max] |
| RefSeq | XP_002305262.1 | 0 | 22 | 452 | 2 | 434 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002327490.1 | 0 | 23 | 452 | 21 | 449 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002513653.1 | 0 | 1 | 452 | 23 | 470 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 8.99998e-41 | 36 | 323 | 30 | 342 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 8.99998e-41 | 36 | 323 | 30 | 342 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 8.99998e-41 | 36 | 323 | 30 | 342 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 8.99998e-41 | 36 | 323 | 30 | 342 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.000000000000001 | 50 | 396 | 26 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DY257045 | 329 | 77 | 405 | 0 |
| FC906391 | 300 | 24 | 323 | 0 |
| DY294251 | 404 | 24 | 410 | 0 |
| DW138823 | 315 | 52 | 366 | 0 |
| EB679225 | 301 | 68 | 368 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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