| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_033821m |
| Family | GH28 |
| Protein Properties | Length: 247 Molecular Weight: 26001.1 Isoelectric Point: 8.498 |
| Chromosome | Chromosome/Scaffold: 07729 Start: 39495 End: 40393 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 2 | 235 | 0 |
| LRFSGSRNIAITGLTSLNSQMFNIDINGCHNAKLQGITVSSPGNSPNTDGIHVQMSSDVTILNSKVGTGDDCISIGPGTTNLWIENFICGPGHGISIGSL GKDLREAGVQNVTVKSARIAGTQNGLRIKSWGRPSSGFARNIIFQHVAMNNVNNPIVIDQNYCPHNKNCPGQASGVKINDVTYQDIHGTSATEVAVKFDC SKRNPCTGIRMEDVKITYNNRPADASCNNANGKA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 247 Download |
| SLRFSGSRNI AITGLTSLNS QMFNIDINGC HNAKLQGITV SSPGNSPNTD GIHVQMSSDV 60 TILNSKVGTG DDCISIGPGT TNLWIENFIC GPGHGISIGS LGKDLREAGV QNVTVKSARI 120 AGTQNGLRIK SWGRPSSGFA RNIIFQHVAM NNVNNPIVID QNYCPHNKNC PGQASGVKIN 180 DVTYQDIHGT SATEVAVKFD CSKRNPCTGI RMEDVKITYN NRPADASCNN ANGKASGVVQ 240 PSSCPS* 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 5.0e-68 | 1 | 241 | 241 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 8.0e-70 | 1 | 246 | 247 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 3.0e-75 | 1 | 245 | 248 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-77 | 1 | 236 | 236 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02155 | PLN02155 | 2.0e-95 | 1 | 244 | 245 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002331621.1 | 0 | 1 | 244 | 152 | 395 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002331659.1 | 0 | 1 | 244 | 145 | 388 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002331662.1 | 0 | 1 | 244 | 145 | 388 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002334853.1 | 0 | 1 | 244 | 50 | 293 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002529090.1 | 0 | 1 | 244 | 149 | 392 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 3e-21 | 2 | 218 | 154 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1hg8_A | 3e-16 | 9 | 229 | 114 | 341 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1czf_B | 0.0000000000001 | 48 | 228 | 178 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1czf_A | 0.0000000000001 | 48 | 228 | 178 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1ib4_B | 0.0000000000004 | 9 | 228 | 114 | 339 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
|---|
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EE255801 | 233 | 12 | 244 | 0 |
| EC946744 | 244 | 1 | 244 | 0 |
| DT512918 | 244 | 1 | 244 | 0 |
| JG078849 | 243 | 2 | 244 | 0 |
| JG072147 | 243 | 2 | 244 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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