Basic Information | |
---|---|
Species | Manihot esculenta |
Cazyme ID | cassava4.1_033867m |
Family | GH28 |
Protein Properties | Length: 410 Molecular Weight: 43803.6 Isoelectric Point: 6.3887 |
Chromosome | Chromosome/Scaffold: 08359 Start: 796001 End: 797573 |
Description | polygalacturonase 4 |
View CDS |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 69 | 398 | 0 |
EACKKNADPAKVLVPKGTFLTSPVVFQGPCKSSNSIIVEVQGTVVATTNLSQYEDYWFLFEKINGVTLTGGGIFDGQGPKIWKCKENNDCTKLPSSIKFQ SVTNGVISEITSVNSKFFHYHITECNHFTAKNLKIIAPDESPNTDGIHISSTNRVTVTKSTIRTGDDCISIGDGVTDGTFSEIFCGPGHGISIGSLGKYE NEDDVNRILVTNCTLSNTQNGVRIKTWGGSPPSKASGITFEDIIMNNVKNPIIIDQNYGDISKPSQVKVSDIQYKKIRGTSVSKVAVSLLCSPSVPCEGI ELNDIDLIYADAKLPNSSSVSASCENAEVT |
Full Sequence |
---|
Protein Sequence Length: 410 Download |
MAISSLISYA KTLLVFSLAF ISHAQEVHCR GLSDTPIASA TKIFDVTKYG AIGDGKTDSA 60 KVFTNVWNEA CKKNADPAKV LVPKGTFLTS PVVFQGPCKS SNSIIVEVQG TVVATTNLSQ 120 YEDYWFLFEK INGVTLTGGG IFDGQGPKIW KCKENNDCTK LPSSIKFQSV TNGVISEITS 180 VNSKFFHYHI TECNHFTAKN LKIIAPDESP NTDGIHISST NRVTVTKSTI RTGDDCISIG 240 DGVTDGTFSE IFCGPGHGIS IGSLGKYENE DDVNRILVTN CTLSNTQNGV RIKTWGGSPP 300 SKASGITFED IIMNNVKNPI IIDQNYGDIS KPSQVKVSDI QYKKIRGTSV SKVAVSLLCS 360 PSVPCEGIEL NDIDLIYADA KLPNSSSVSA SCENAEVTIA AANLQGCAN* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 3.0e-80 | 46 | 407 | 376 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 5.0e-87 | 38 | 377 | 348 | + polygalacturonase | ||
PLN02793 | PLN02793 | 2.0e-92 | 39 | 385 | 362 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-103 | 77 | 400 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 4.0e-128 | 10 | 397 | 399 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI36886.1 | 0 | 10 | 408 | 9 | 415 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002268540.1 | 0 | 10 | 408 | 9 | 411 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301488.1 | 0 | 61 | 397 | 2 | 341 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301489.1 | 0 | 7 | 397 | 1 | 401 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002336609.1 | 0 | 63 | 375 | 2 | 318 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ib4_B | 1e-21 | 134 | 375 | 74 | 321 | A Chain A, Crystal Structure Of The Lysosomal 66.3 Kda Protein From Mouse Solved By S-Sad |
PDB | 1ib4_A | 1e-21 | 134 | 375 | 74 | 321 | A Chain A, Crystal Structure Of The Lysosomal 66.3 Kda Protein From Mouse Solved By S-Sad |
PDB | 1ia5_A | 1e-21 | 134 | 375 | 74 | 321 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1bhe_A | 4e-16 | 138 | 357 | 115 | 343 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 7e-16 | 80 | 360 | 26 | 305 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |