Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.TU.contig_27928.2 |
Family | GH28 |
Protein Properties | Length: 483 Molecular Weight: 52952.5 Isoelectric Point: 8.1561 |
Chromosome | Chromosome/Scaffold: 27928 Start: 10716 End: 14247 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 110 | 452 | 0 |
DKGGAQLNVPRGRWLTGSFNLTSNFTLFLEEGAVILGSQDINEWPIIEPLPSYGRGRERLGGRHISLIHGDRLTNVVITGQNGTIDGQGRMWWELWWNRT LVHTRGHLLELKNSRNLLISHLTFRNSPFWTIHPVYCSNVVIRGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDQYGVAFARPSSN IIVRRISGTTPTCSGVGIGSEMSGGIFNVTMEDLRVWNSAAGVRIKTDKGRGGYIANITMSNITMERVKIPIRISKGSNDHPDGNWDPKAIPKVKGIFIS NVVSLNSTRAPLLEGVEEALFEDICLKNITLLGLPTARTWHCE |
Full Sequence |
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Protein Sequence Length: 483 Download |
MESDKPNWGA IMGAFTRTSW AFVLLLFTVL AILSLQISTK SVLPIRVFSG SSEAAGTSSP 60 DPRSCSGFFT ELPPRRVVMS IKEFGGVGDG ETSNTETFRK AMKYMQRFVD KGGAQLNVPR 120 GRWLTGSFNL TSNFTLFLEE GAVILGSQDI NEWPIIEPLP SYGRGRERLG GRHISLIHGD 180 RLTNVVITGQ NGTIDGQGRM WWELWWNRTL VHTRGHLLEL KNSRNLLISH LTFRNSPFWT 240 IHPVYCSNVV IRGMTILAPL NAPNTDGIDP DSSTNVCIED CYIESGDDLV AVKSGWDQYG 300 VAFARPSSNI IVRRISGTTP TCSGVGIGSE MSGGIFNVTM EDLRVWNSAA GVRIKTDKGR 360 GGYIANITMS NITMERVKIP IRISKGSNDH PDGNWDPKAI PKVKGIFISN VVSLNSTRAP 420 LLEGVEEALF EDICLKNITL LGLPTARTWH CEFVSGSSSS VFPMPCPELQ NNISLSSRCS 480 FS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 9.0e-22 | 191 | 406 | 227 | + polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-26 | 79 | 417 | 358 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 1.0e-28 | 66 | 415 | 366 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-34 | 177 | 460 | 298 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 3.0e-58 | 78 | 420 | 381 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN76963.1 | 0 | 12 | 472 | 1 | 459 | hypothetical protein [Vitis vinifera] |
EMBL | CBI37530.1 | 0 | 1 | 479 | 1 | 476 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002274138.1 | 0 | 1 | 479 | 1 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002310517.1 | 0 | 45 | 482 | 1 | 437 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002526639.1 | 0 | 10 | 482 | 6 | 480 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 9.94922e-44 | 71 | 442 | 22 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 9.94922e-44 | 71 | 442 | 22 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 9.94922e-44 | 71 | 442 | 22 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 9.94922e-44 | 71 | 442 | 22 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 7e-24 | 123 | 383 | 52 | 310 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |