Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.TU.contig_29377.1 |
Family | PL4 |
Protein Properties | Length: 698 Molecular Weight: 79904 Isoelectric Point: 5.0221 |
Chromosome | Chromosome/Scaffold: 29377 Start: 4381 End: 8851 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 58 | 669 | 0 |
QLRDLDQNVVMDNGILQVTLSKPEGSVIGIRYNGIENLLAVQNKEFDRGYWDLVWNAAGTKGTKGKLDRIEATEFRVVVENEEQIELSFTRKWDPSLEGK IVPLNIDKRFVMLRGSSGFYTYAIFEHLEGWPALDIDNIRVAFKLNKERFRYMAIADNRQRSMPLPDDRSPNRSQVLDYPEAVLLVDPVEPEFRGEVDDK YQYSSESKDVKVHGWIGTKPSVGFWQITPSNEFRSAGPVKQFLTSHVGPTNLGIFHSVHYSGEDLVIRFAENEPWKKVFGPVFIYLNSLSDENDPLLLWK DANDQLVIEEENWPYTFPASEDFPRSDQRGSVNGRLLVQDCDKCIPTNGAYVGLAPPGEIGSWQKECKGYQFWTTTDNDGYFNISNIRTGSYNLYAWVPG FIGDYRYDILVNITAGSNIHLEELIHEPPRDGPTLWEIGIPDRSAAEFYVPDPNPMYLNKLYINHPDRFRQYGLWERYSEIYRNEDLIYDVDVNDYRKDW FFAQVTRKKENNIYEGTTWQIKFKLDSVDESGIYKLRLALATAQAAELQVRVNDDDLEKSPLFSSGKIGKDNTIARHGIHGLYWVYNVNVPGSLLLNGNN TIFLTQPLSTSR |
Full Sequence |
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Protein Sequence Length: 698 Download |
METGRASFHI LSFPSSRVYT RLPRLSSGCF GRLVKFLLAL TFSLEIAIAL PASTLETQLR 60 DLDQNVVMDN GILQVTLSKP EGSVIGIRYN GIENLLAVQN KEFDRGYWDL VWNAAGTKGT 120 KGKLDRIEAT EFRVVVENEE QIELSFTRKW DPSLEGKIVP LNIDKRFVML RGSSGFYTYA 180 IFEHLEGWPA LDIDNIRVAF KLNKERFRYM AIADNRQRSM PLPDDRSPNR SQVLDYPEAV 240 LLVDPVEPEF RGEVDDKYQY SSESKDVKVH GWIGTKPSVG FWQITPSNEF RSAGPVKQFL 300 TSHVGPTNLG IFHSVHYSGE DLVIRFAENE PWKKVFGPVF IYLNSLSDEN DPLLLWKDAN 360 DQLVIEEENW PYTFPASEDF PRSDQRGSVN GRLLVQDCDK CIPTNGAYVG LAPPGEIGSW 420 QKECKGYQFW TTTDNDGYFN ISNIRTGSYN LYAWVPGFIG DYRYDILVNI TAGSNIHLEE 480 LIHEPPRDGP TLWEIGIPDR SAAEFYVPDP NPMYLNKLYI NHPDRFRQYG LWERYSEIYR 540 NEDLIYDVDV NDYRKDWFFA QVTRKKENNI YEGTTWQIKF KLDSVDESGI YKLRLALATA 600 QAAELQVRVN DDDLEKSPLF SSGKIGKDNT IARHGIHGLY WVYNVNVPGS LLLNGNNTIF 660 LTQPLSTSRF QGIMYDYIRF EESSNSSLLK NSTCLRF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13620 | CarboxypepD_reg | 0.0004 | 431 | 478 | 48 | + Carboxypeptidase regulatory-like domain. | ||
cd10316 | RGL4_M | 5.0e-31 | 385 | 481 | 97 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 6.0e-44 | 493 | 680 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 1.0e-70 | 59 | 351 | 296 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 7.0e-96 | 31 | 254 | 224 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI19298.1 | 0 | 53 | 687 | 2 | 652 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002285626.1 | 0 | 68 | 687 | 1 | 623 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002301112.1 | 0 | 68 | 681 | 1 | 612 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527353.1 | 0 | 57 | 687 | 6 | 637 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527357.1 | 0 | 53 | 681 | 2 | 632 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DT552229 | 293 | 68 | 359 | 0 |
DW479600 | 286 | 63 | 348 | 0 |
DW479599 | 284 | 63 | 346 | 0 |
DY293973 | 344 | 57 | 397 | 0 |
DY969340 | 309 | 284 | 591 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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