| Basic Information | |
|---|---|
| Species | Carica papaya |
| Cazyme ID | evm.TU.contig_34124.1 |
| Family | GH28 |
| Protein Properties | Length: 311 Molecular Weight: 35057.3 Isoelectric Point: 6.411 |
| Chromosome | Chromosome/Scaffold: 34124 Start: 1078 End: 3083 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 28 | 225 | 1.3e-40 |
| SLHIVRCENTSIHDVSIYGDFNTPNNDGMDIEDSNNTVITRCHIDTGDDAICPKTYTGPLYNLTATDCWIRTKSSAIKLGSASWFDFKNLVFDNITIVDS HRGLGFQIRDGGNAGDITFSNINITTRYYDPSWWGRAEPIYVTTCSRNSCFKAGSISNVLFINITATSENGIFLSGSEDGKLSDIRFINMNLTYRRWT | |||
| Full Sequence |
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| Protein Sequence Length: 311 Download |
| MSTANDSSIL HVLLNLFMYL TRRLCNCSLH IVRCENTSIH DVSIYGDFNT PNNDGMDIED 60 SNNTVITRCH IDTGDDAICP KTYTGPLYNL TATDCWIRTK SSAIKLGSAS WFDFKNLVFD 120 NITIVDSHRG LGFQIRDGGN AGDITFSNIN ITTRYYDPSW WGRAEPIYVT TCSRNSCFKA 180 GSISNVLFIN ITATSENGIF LSGSEDGKLS DIRFINMNLT YRRWTKYAGG LVDYRPGCEG 240 LVKHNTAGII MEHVEGFEVE NVNMRWFDAK TGLWNNPLDF RPSTVNNISF FNFHSGLYRQ 300 VDQEPKRNHS * |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 9.0e-5 | 29 | 95 | 67 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 1.0e-5 | 31 | 78 | 48 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 8.0e-6 | 29 | 95 | 67 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-9 | 31 | 221 | 206 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 2.0e-16 | 28 | 154 | 137 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB41176.1 | 0 | 29 | 301 | 199 | 474 | putative protein [Arabidopsis thaliana] |
| EMBL | CBI29894.1 | 0 | 29 | 296 | 56 | 325 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_567055.1 | 0 | 29 | 301 | 199 | 474 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002282920.1 | 0 | 29 | 296 | 196 | 465 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002322693.1 | 0 | 29 | 301 | 173 | 445 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0.0005 | 29 | 146 | 216 | 343 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0.0005 | 29 | 146 | 216 | 343 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0.0005 | 29 | 146 | 216 | 343 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0.0005 | 29 | 146 | 216 | 343 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 4b4w_B | 0.001 | 56 | 180 | 167 | 298 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| ES913761 | 270 | 29 | 297 | 0 |
| FE703127 | 266 | 33 | 298 | 0 |
| EX266440 | 203 | 29 | 231 | 0 |
| EX266440 | 75 | 232 | 306 | 0 |
| EH779540 | 258 | 39 | 296 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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