| Basic Information | |
|---|---|
| Species | Carica papaya |
| Cazyme ID | evm.TU.contig_35388.1 |
| Family | GH28 |
| Protein Properties | Length: 79 Molecular Weight: 8899.7 Isoelectric Point: 7.6741 |
| Chromosome | Chromosome/Scaffold: 35388 Start: 2765 End: 3086 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 7 | 76 | 7.4e-24 |
| RPRALYLHECNNLELRGLTHLNSQRNHITIHQYNNISISYLHTIAPKTSPNTDGIDLSSSSQINISHSFI | |||
| Full Sequence |
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| Protein Sequence Length: 79 Download |
| VNETCPRPRA LYLHECNNLE LRGLTHLNSQ RNHITIHQYN NISISYLHTI APKTSPNTDG 60 IDLSSSSQIN ISHSFIGIX |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 7.0e-6 | 17 | 60 | 44 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-7 | 8 | 60 | 53 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 7.0e-9 | 1 | 60 | 63 | + Probable polygalacturonase | ||
| PLN03010 | PLN03010 | 6.0e-11 | 10 | 60 | 51 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 3.0e-13 | 7 | 60 | 54 | + Probable polygalacturonase At3g15720 | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAY21049.1 | 4e-16 | 2 | 74 | 149 | 221 | PGN [Glycine max] |
| GenBank | ABC75354.1 | 3e-17 | 7 | 76 | 142 | 211 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| EMBL | CAN61695.1 | 8e-17 | 7 | 77 | 136 | 206 | hypothetical protein [Vitis vinifera] |
| RefSeq | NP_195292.2 | 0.000000000000003 | 7 | 76 | 143 | 212 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002515526.1 | 0.000000000000001 | 9 | 76 | 146 | 213 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.002 | 8 | 77 | 151 | 220 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| DB999738 | 54 | 7 | 60 | 0.0000000000001 |
| CV538127 | 54 | 7 | 60 | 0.0000000000007 |
| CV536748 | 54 | 7 | 60 | 0.000000000001 |
| AI973769 | 60 | 1 | 60 | 0.000000000001 |
| CX946695 | 59 | 2 | 60 | 0.000000000002 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Brachypodium distachyon | Bradi2g17920.1 | ||||
| Oryza sativa | LOC_Os06g16810.1 | ||||
| Prunus persica | ppa025007m | ||||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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