y
Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.TU.contig_36490.1 |
Family | GT5 |
Protein Properties | Length: 382 Molecular Weight: 43068 Isoelectric Point: 5.677 |
Chromosome | Chromosome/Scaffold: 36490 Start: 196 End: 1585 |
Description | starch synthase 2 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT5 | 23 | 374 | 0 |
VFIANDWHTALLPVYLKAYYRDHGLMKYTRSVLVIHNIAHQGRGPVEDFFSVDLPEHYIDLFKLFDPIGGEHFNIFAAGLKAADRVVTVSHGYAWELRTS EGGWGLHGIINENDWKLSGIVNGIDTEEWNPVSDVHLTSDGYTNYSLETLHIGKPQCKAALQKELGLPVREHVPVIGFIGRLDDQKGVDLIAEAVPWMMS QDVQLIMLGTGRPDLEQLLRNFENQYNDRIRGWVGFSVKTAHRITAGVDILLMPSRFEPCGLNQLYAMSYGTIPVVHAVGGLRDTVVPFNPYEESGLGWT FDSASTDKLIPALGNCLYTYREYKKSWEGLQKRGMMQDLSWDHAAEKYEEVL |
Full Sequence |
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Protein Sequence Length: 382 Download |
MFYLQVPWHV PCGGVCYGDG NLVFIANDWH TALLPVYLKA YYRDHGLMKY TRSVLVIHNI 60 AHQGRGPVED FFSVDLPEHY IDLFKLFDPI GGEHFNIFAA GLKAADRVVT VSHGYAWELR 120 TSEGGWGLHG IINENDWKLS GIVNGIDTEE WNPVSDVHLT SDGYTNYSLE TLHIGKPQCK 180 AALQKELGLP VREHVPVIGF IGRLDDQKGV DLIAEAVPWM MSQDVQLIML GTGRPDLEQL 240 LRNFENQYND RIRGWVGFSV KTAHRITAGV DILLMPSRFE PCGLNQLYAM SYGTIPVVHA 300 VGGLRDTVVP FNPYEESGLG WTFDSASTDK LIPALGNCLY TYREYKKSWE GLQKRGMMQD 360 LSWDHAAEKY EEVLVTAKYQ W* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK14099 | PRK14099 | 5.0e-83 | 26 | 372 | 352 | + glycogen synthase; Provisional | ||
COG0297 | GlgA | 2.0e-110 | 26 | 372 | 351 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
PRK00654 | glgA | 2.0e-140 | 26 | 373 | 348 | + glycogen synthase; Provisional | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 5.0e-160 | 23 | 374 | 352 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
TIGR02095 | glgA | 1.0e-165 | 23 | 374 | 352 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABV25894.1 | 0 | 4 | 381 | 374 | 751 | starch synthase isoform II [Manihot esculenta] |
GenBank | ACL98481.1 | 0 | 5 | 381 | 416 | 792 | starch synthase IIa precursor [Lotus japonicus] |
GenBank | ACL98482.1 | 0 | 4 | 381 | 423 | 800 | starch synthase IIb precursor [Lotus japonicus] |
RefSeq | XP_002324061.1 | 0 | 4 | 381 | 365 | 742 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002531856.1 | 0 | 4 | 381 | 377 | 754 | starch synthase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vuf_A | 0 | 17 | 375 | 151 | 509 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 3vue_A | 0 | 17 | 375 | 151 | 509 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
PDB | 3d1j_A | 0 | 26 | 373 | 135 | 472 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 3guh_A | 0 | 26 | 380 | 135 | 479 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4u_A | 0 | 26 | 380 | 135 | 479 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO781048 | 378 | 5 | 382 | 0 |
HO445868 | 379 | 4 | 382 | 0 |
HO795490 | 314 | 69 | 382 | 0 |
HO390058 | 380 | 4 | 382 | 0 |
HO411612 | 375 | 8 | 382 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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