y
Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_1.118 |
Family | CBM43 |
Protein Properties | Length: 186 Molecular Weight: 19043.4 Isoelectric Point: 5.6408 |
Chromosome | Chromosome/Scaffold: 1 Start: 1886394 End: 1887931 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 22 | 99 | 3.5e-30 |
CLCKDGVGDQALQKSIDYACGAGADCTPILQNGACFQPNTVKSHCDYAVNSYFQRKNQMSGSCDFSGTATVSANPPSN |
Full Sequence |
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Protein Sequence Length: 186 Download |
MPLLLLFLLF LAMTGQSSAT YCLCKDGVGD QALQKSIDYA CGAGADCTPI LQNGACFQPN 60 TVKSHCDYAV NSYFQRKNQM SGSCDFSGTA TVSANPPSNV VTGCSYPTSN TGGTTTTTPT 120 TTPTTTPTTT TGGTTTGTTS PTMFPGSTPL GPTGINDQSG AVAIFKTTSF FFSIGLTLWF 180 SGLVA* 240 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 2.0e-20 | 20 | 91 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 4.0e-32 | 20 | 106 | 87 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU14053.1 | 0 | 1 | 109 | 1 | 108 | unknown [Glycine max] |
GenBank | ACU19899.1 | 0 | 1 | 161 | 1 | 158 | unknown [Glycine max] |
GenBank | ACU20773.1 | 0 | 1 | 109 | 1 | 108 | unknown [Glycine max] |
EMBL | CAN73948.1 | 0 | 1 | 184 | 1 | 189 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311337.1 | 0 | 1 | 181 | 1 | 177 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 3e-20 | 14 | 108 | 6 | 98 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CU475347 | 176 | 12 | 183 | 0 |
CU509899 | 176 | 12 | 183 | 0 |
CU627472 | 176 | 12 | 183 | 0 |
CU579415 | 176 | 12 | 183 | 0 |
CU626532 | 176 | 12 | 183 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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