Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_10.230 |
Family | GH28 |
Protein Properties | Length: 339 Molecular Weight: 37500.1 Isoelectric Point: 9.6755 |
Chromosome | Chromosome/Scaffold: 10 Start: 2899164 End: 2901367 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 2 | 249 | 0 |
ACSCPARSILLVPAGFTSLVHPIDFAGPCRSKVTLQISGAIVSPKNPESWTGLNPRKWLYFHGVNHLQVEGGGTINGRGQKWWDCKVNKTSPYHRAPTAM TFHRCKNLKVHNLKLINSQQMHIAFTTCNQVKASHLEVIAPASSPNTDGIHISNSHNVKIKNSIVRTGDDCISIVSNSSKIQIRNIFCGPGHGIRLVNLT LIILKVHDVKVDGAFLFNTDNGLRIKTWQGGNGFASDIKFQNILMENS |
Full Sequence |
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Protein Sequence Length: 339 Download |
MACSCPARSI LLVPAGFTSL VHPIDFAGPC RSKVTLQISG AIVSPKNPES WTGLNPRKWL 60 YFHGVNHLQV EGGGTINGRG QKWWDCKVNK TSPYHRAPTA MTFHRCKNLK VHNLKLINSQ 120 QMHIAFTTCN QVKASHLEVI APASSPNTDG IHISNSHNVK IKNSIVRTGD DCISIVSNSS 180 KIQIRNIFCG PGHGIRLVNL TLIILKVHDV KVDGAFLFNT DNGLRIKTWQ GGNGFASDIK 240 FQNILMENSL GELRNLFAGI PMVHLRASCI LPHASHLFQA SLTRNSGSNL QFNHFEEYFY 300 IESQPAESSV ILCLVSFNFF YLFPSSIRQE TAHGKIDK* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 4.0e-56 | 3 | 248 | 249 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 1.0e-62 | 11 | 249 | 242 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 8.0e-72 | 3 | 248 | 248 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-80 | 2 | 248 | 253 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 8.0e-141 | 1 | 248 | 252 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD28401.1 | 0 | 1 | 248 | 84 | 335 | Glycoside hydrolase, family 28 [Medicago truncatula] |
GenBank | ABM67700.1 | 0 | 2 | 248 | 81 | 331 | polygalacturonase [Citrus sinensis] |
EMBL | CBI36284.1 | 0 | 1 | 248 | 76 | 327 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002299601.1 | 0 | 1 | 248 | 83 | 334 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517603.1 | 0 | 1 | 248 | 60 | 311 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-21 | 70 | 248 | 113 | 303 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1hg8_A | 0.000000000007 | 73 | 248 | 78 | 266 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 2iq7_G | 0.00000000006 | 11 | 248 | 26 | 254 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.00000000006 | 11 | 248 | 26 | 254 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.00000000006 | 11 | 248 | 26 | 254 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EC954904 | 238 | 1 | 234 | 0 |
EB680983 | 198 | 2 | 197 | 0 |
GD094447 | 195 | 1 | 193 | 0 |
FG140031 | 202 | 1 | 200 | 0 |
FN026494 | 209 | 44 | 248 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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