Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_10.242 |
Family | GH28 |
Protein Properties | Length: 461 Molecular Weight: 49013.6 Isoelectric Point: 6.3008 |
Chromosome | Chromosome/Scaffold: 10 Start: 2972533 End: 2975073 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 61 | 390 | 0 |
CHCRNGEAPIMVVPAGRTFLLKPVDFQGPCKPPSINVQIEGNIVAPRNPGEWEGRDVQHWLEFSDVNGLLLSGSGVIDGQGSHWWLNPQRTRPIALAIKS CNNVEIRGLKNVNSASSHMHIGGCNGVIISDTHISAPGSSPNTDGIDIGFSTHVYIANSLIQTGDDCIAIGDGSSFITISGITCGPGHGISIGSLGVNGE NDKVEEVHVCNCTLQGTSNGARIKTWQGGSGYARKISFEDIQMDGVANPILIDQYYCPNQPVPCKNQKSAVKVSDILYNGIHGTSSTKEAIVLRCSQSIG CSNIQLININLASLDSATPTTASCFNAHGT |
Full Sequence |
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Protein Sequence Length: 461 Download |
MFQQVHVNII LVLILSLATI KAASHRLPSC PASVDVTQYG AVGDGDTDDS QAFLRAWTAI 60 CHCRNGEAPI MVVPAGRTFL LKPVDFQGPC KPPSINVQIE GNIVAPRNPG EWEGRDVQHW 120 LEFSDVNGLL LSGSGVIDGQ GSHWWLNPQR TRPIALAIKS CNNVEIRGLK NVNSASSHMH 180 IGGCNGVIIS DTHISAPGSS PNTDGIDIGF STHVYIANSL IQTGDDCIAI GDGSSFITIS 240 GITCGPGHGI SIGSLGVNGE NDKVEEVHVC NCTLQGTSNG ARIKTWQGGS GYARKISFED 300 IQMDGVANPI LIDQYYCPNQ PVPCKNQKSA VKVSDILYNG IHGTSSTKEA IVLRCSQSIG 360 CSNIQLININ LASLDSATPT TASCFNAHGT TTALSTPLVA CLTPLDATTN NARSQTTACT 420 AQPPPMIGFQ PDYNYSGVKF LLPILSYLIV TYIFYYICCY * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-93 | 14 | 388 | 385 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 4.0e-96 | 63 | 388 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 3.0e-112 | 36 | 397 | 370 | + Probable polygalacturonase | ||
PLN03010 | PLN03010 | 3.0e-114 | 35 | 392 | 360 | + polygalacturonase | ||
PLN03003 | PLN03003 | 7.0e-123 | 33 | 454 | 438 | + Probable polygalacturonase At3g15720 |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN62658.1 | 0 | 9 | 402 | 30 | 433 | hypothetical protein [Vitis vinifera] |
EMBL | CBI36306.1 | 0 | 8 | 402 | 98 | 493 | unnamed protein product [Vitis vinifera] |
EMBL | CBI36306.1 | 0.0000004 | 328 | 402 | 21 | 94 | unnamed protein product [Vitis vinifera] |
EMBL | CBI36307.1 | 0 | 2 | 402 | 1 | 402 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002266797.1 | 0 | 33 | 402 | 17 | 372 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 1e-24 | 129 | 384 | 72 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-24 | 129 | 384 | 72 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-24 | 129 | 384 | 72 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-24 | 129 | 384 | 72 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 1e-24 | 129 | 384 | 72 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |