Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_10.250 |
Family | GH28 |
Protein Properties | Length: 387 Molecular Weight: 42205.2 Isoelectric Point: 8.8305 |
Chromosome | Chromosome/Scaffold: 10 Start: 3011271 End: 3015205 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 25 | 374 | 0 |
CGASSSLKKLVIPPGKAFLLKPMKFSGPCKSRILVYGFTGFEMVFIGKKSFKYLEITQGQLLIESYLMPPFKGPEWGEEKDKWLVFRGIRDLIIKGSNQI DGRGSNWWKSCNNTNTCMRPTVNCSKLRVGGITHINSARNHISIYNCVDVLLEDLRLYAPNDSPNTDGINIGQSRNIQIVDTFIGTGDDCVAINSGSYNI TITRMTCGPGHGISIGSLGKNGDEAKVEDIHVKNSILNASDNGVRIKTWQGGKGYVRKISFEDITFIGVANPIVIDQYYCPYQICNEQSNAVQISDVSYI RARGTTRTSKAIILNCSKTVGCNNIMLDGINISAVDNKAVSATCINAHGS |
Full Sequence |
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Protein Sequence Length: 387 Download |
MDFGAKGDGK TDDSRAFSKA WAATCGASSS LKKLVIPPGK AFLLKPMKFS GPCKSRILVY 60 GFTGFEMVFI GKKSFKYLEI TQGQLLIESY LMPPFKGPEW GEEKDKWLVF RGIRDLIIKG 120 SNQIDGRGSN WWKSCNNTNT CMRPTVNCSK LRVGGITHIN SARNHISIYN CVDVLLEDLR 180 LYAPNDSPNT DGINIGQSRN IQIVDTFIGT GDDCVAINSG SYNITITRMT CGPGHGISIG 240 SLGKNGDEAK VEDIHVKNSI LNASDNGVRI KTWQGGKGYV RKISFEDITF IGVANPIVID 300 QYYCPYQICN EQSNAVQISD VSYIRARGTT RTSKAIILNC SKTVGCNNIM LDGINISAVD 360 NKAVSATCIN AHGSWRNSNP PVNCLN* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN02188 | PLN02188 | 5.0e-84 | 3 | 384 | 393 | + polygalacturonase/glycoside hydrolase family protein |
PLN02218 | PLN02218 | 3.0e-85 | 2 | 372 | 381 | + polygalacturonase ADPG |
PLN03003 | PLN03003 | 1.0e-94 | 3 | 385 | 393 | + Probable polygalacturonase At3g15720 |
PLN02793 | PLN02793 | 1.0e-101 | 2 | 386 | 395 | + Probable polygalacturonase |
PLN03010 | PLN03010 | 4.0e-107 | 1 | 386 | 388 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD28723.1 | 0 | 1 | 385 | 19 | 390 | Glycoside hydrolase, family 28 [Medicago truncatula] |
EMBL | CBI36306.1 | 0 | 1 | 385 | 127 | 493 | unnamed protein product [Vitis vinifera] |
EMBL | CBI36306.1 | 0.00000001 | 311 | 382 | 19 | 90 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002266797.1 | 0 | 1 | 385 | 21 | 372 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002266960.1 | 0 | 2 | 385 | 24 | 389 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 2e-23 | 17 | 358 | 5 | 321 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 2e-23 | 17 | 358 | 5 | 321 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 2e-23 | 17 | 358 | 5 | 321 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 2e-23 | 17 | 358 | 5 | 321 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 2e-23 | 17 | 358 | 5 | 321 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CV536748 | 241 | 104 | 340 | 0 |
GT141262 | 230 | 156 | 385 | 0 |
FN025824 | 204 | 183 | 385 | 0 |
CA785641 | 194 | 165 | 357 | 0 |
CX192293 | 270 | 34 | 303 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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