Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_10.252 |
Family | GH28 |
Protein Properties | Length: 300 Molecular Weight: 32458.5 Isoelectric Point: 6.771 |
Chromosome | Chromosome/Scaffold: 10 Start: 3022420 End: 3024172 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 8 | 286 | 0 |
EWGEEKKKWLVFQGIHDLIIKGSNKIDGRGSDWWKSCNNTDNCMRPTALSFEDSSKLHVSGLTHINSAKNHISIHNCVDVHLEDLHIYAPHDSPNTDGID ISESRNIEIVDTFIGTGDDCVALNSGCYNITITHMTCGPGHGISIGSLGKNGEDAKVEGIHVKSSTLNASDNGLRIKTWQGGKGYARNISFEDVTFIKVA NPIVIDQYYCPHKRCNEQSSAVQISDVSYIGARGTTRTSEAIILNCSKTVGCNNITLDGINISAVDNKAVSATCINAQG |
Full Sequence |
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Protein Sequence Length: 300 Download |
MAPFKGPEWG EEKKKWLVFQ GIHDLIIKGS NKIDGRGSDW WKSCNNTDNC MRPTALSFED 60 SSKLHVSGLT HINSAKNHIS IHNCVDVHLE DLHIYAPHDS PNTDGIDISE SRNIEIVDTF 120 IGTGDDCVAL NSGCYNITIT HMTCGPGHGI SIGSLGKNGE DAKVEGIHVK SSTLNASDNG 180 LRIKTWQGGK GYARNISFED VTFIKVANPI VIDQYYCPHK RCNEQSSAVQ ISDVSYIGAR 240 GTTRTSEAII LNCSKTVGCN NITLDGINIS AVDNKAVSAT CINAQGSWLN SKPPINCLK* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 4.0e-72 | 17 | 284 | 274 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 3.0e-75 | 17 | 299 | 289 | + Probable polygalacturonase At3g15720 | ||
PLN02793 | PLN02793 | 1.0e-77 | 17 | 298 | 287 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 5.0e-78 | 17 | 284 | 270 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03010 | PLN03010 | 6.0e-82 | 19 | 299 | 282 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY21049.1 | 0 | 1 | 298 | 99 | 396 | PGN [Glycine max] |
EMBL | CAN62658.1 | 0 | 2 | 298 | 125 | 433 | hypothetical protein [Vitis vinifera] |
EMBL | CBI36306.1 | 0 | 2 | 298 | 194 | 493 | unnamed protein product [Vitis vinifera] |
EMBL | CBI36306.1 | 0.000000001 | 224 | 295 | 19 | 90 | unnamed protein product [Vitis vinifera] |
EMBL | CBI36307.1 | 0 | 16 | 299 | 115 | 403 | unnamed protein product [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 2e-24 | 4 | 271 | 53 | 320 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-24 | 4 | 271 | 53 | 320 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-24 | 4 | 271 | 53 | 320 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-24 | 4 | 271 | 53 | 320 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 2e-24 | 4 | 271 | 53 | 320 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CV536748 | 237 | 17 | 253 | 0 |
EY474520 | 246 | 53 | 298 | 0 |
DR050772 | 266 | 17 | 269 | 0 |
EX340593 | 279 | 22 | 287 | 0 |
FS942787 | 281 | 17 | 286 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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